Fig. 4
Nucleotide diversity and fixation index across the deletion site on chromosome 7. a The consensus sequence covering the breakpoint of deletion in 133 Asian rice varieties. All surveyed Asian rice cultivars had an identical deletion. The breakpoint of deletion located between 2,843,274 and 2,843,275 bp on chromosome 7 in the Nipponbare reference genome (Os-Nipponbare-Reference-IRGSP-1.0, MSU7). b The location of 14 sampled loci within the ~1 Mb genomic region surrounding the deletion site on chromosome 7. The position of each loci was showed in Supplementary Data 5. c The relative ratio of nucleotide diversity (π) in O. sativa to O. rufipogon shows the ~500 kb selective sweep surrounding the deletion site in Asian cultivated rice. d The fixation index (FST) between indica and japonica cultivars at the 14 sampled loci. The dashed red line indicates the deletion site in the genome of O. sativa
