Fig. 5 | Nature Communications

Fig. 5

From: Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs

Fig. 5The alternative text for this image may have been generated using AI.

Zelda global kinetic properties. a Living GFP-zld/+;His2Av-mRFP/ + embryo imaged by confocal microscopy from interphase of nc13 to early interphase of nc14. Successive representative maximum intensity projected Z-stack images are shown at the indicated timings (in minutes) (see also Supplementary Movie 9). Scale bars represent 20 μm. b Average intensity profiles for histones (red), nucleoplasmic Zelda (green) and cytoplasmic Zelda (blue) measured from a nc13 embryo transitioning into nc14. An automatic tracking of fluorescence from a minimum of 114 nuclei and 10 cytoplasmic ROI generated these profiles. Error bars represent SD. c FRAP mean curve (black) and the mean of all the fits (red curve) using reaction-diffusion models determined at the bleached spot for 25 nuclei from nc14 developing GFP-zld embryos. Error bars represent SD from different nuclei (light blue bars). d Example of a time trace obtained by FCS from a GFP-zld nc14 embryo showing no bleaching. e Example of autocorrelation function (black dots) related to d (red curve represents fitting using a reaction-diffusion model). fg Kinetic parameters for Zelda and Ash1 extracted after fitting FCS data with a reaction-diffusion model. f Box plot representing estimated diffusion coefficients (Df). Numbers above each plot represent the mean. Centered lines represent the median and whiskers represent min and max. g Box plot representing estimated residence times (1/koff). Numbers above each plot represent the mean. Centered lines represent the median and whiskers represent min and max

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