Table 1 Overview of the IMEx mutations data set downloadable flat file

From: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set

Feature AC

Feature short label

Feature range(s)

Original sequence

Resulting sequence

Feature type

Feature annotations

Affected protein AC & detailsa

Interaction participants & detailsa

EBI-10828532

p.Arg725Glu

725–725

R

E

mutation(MI:0118)

MI:0612 (comment): Disrupts association with VPS33A and decreases association of VPS18

See Supplementary Table 1

See Supplementary Table 1

EBI-985220

p.Ile114Gly

114–114

I

G

mutation increasing(MI:0382)

 

EBI-4370347

p.[Asn31His;Ala60Val]

31–31

D

H

mutation increasing(MI:0382)

- (kd): 11e-9M

EBI-4370347

p.[Asn31His;Ala60Val]

60–60

A

V

mutation increasing(MI:0382)

- (kd): 11e-9M

EBI-10688294

p.Thr2Ala

2–2

T

A

mutation decreasing rate(MI:1130)

 

EBI-9635600

p.Cys_Ser215-216Ala_Ala

215–216

CS

AA

mutation disrupting(MI:0573)

 

  1. Each mutation annotation is identified with a unique accession (‘Feature AC’) and is described with an HGVS-compliant short label (‘Feature short label’), plus sequence coordinates and amino acid replacement details (‘Feature range(s)’, ‘Original sequence’, ‘Resulting sequence’). The effect the mutation has on the interactions is listed using the PSI-MI controlled vocabulary (‘Feature type’). Each line in the file represents a single continuous section of sequence affected, with mutations spread in multiple positions represented in several lines and sharing the same ‘Feature AC’. Annotations for complex effects that cannot be captured via PSI-MI CV and kinetic parameters are also recorded when available (‘Feature annotations’). aThese are placeholders for additional columns containing information about the affected proteins and interactions. These are available in the fully expanded version of this table in Supplementary Table 1