Table 1 Summary of chemical probes and their chemotype-matched controls for protein methyltransferases. Related to Fig. 1a–c, Supplementary Figs. 1 and 2
From: A chemical biology toolbox to study protein methyltransferases and epigenetic signaling
Target | Probe | In vitro IC50 or Kd (nM) | Cell line: assay | IC50 (nM) | Control |
|---|---|---|---|---|---|
WDR5a | OICR-942914 | 64 | HEK293: disrupt interaction of WDR5b with MLL1 & RbBP5 | 223 & 458 | OICR-0547 |
EEDa | A-39535 | 34 | RD: ↓ H3K27me3 | 90 | A-395N |
EZH2 | GSK34363 | 4 | HCC1806: ↓ H3K27me3 | 250 | |
EZH2,H1 | UNC199911 | 10,45 | MCF10A: ↓ H3K27me3 | 124 | UNC2400 |
DOT1L | SGC094612 | 0.3 | MCF10A,A431: ↓ H3K79me2 | 10,3 | SGC0649 |
G9a & GLP | A-36626 | 4 & 38 | PC3: ↓ H3K9me2 | 300 | Use UNC0642 |
G9a & GLP | UNC064210 | <3 | PC3: ↓ H3K9me2 | 130 | Use A-366 |
SUV420H1/2 | A-19613 | 21 | U2OS: ↓ H4K20me2/3 | 262/370 (SUV420H1) | A-197, SGC2043 |
SMYD2 | BAY-59829 | 27 | HEK293, SMYD2b:↓ p53K370me | 58 | BAY-369 |
SMYD3 | BAY-6035c | 88 | HeLa, SMYD3b: ↓ MEKK2K260me3 | 70 | BAY-444 |
SETD7 | (R)-PFI-227 | 2 | MEFs and MCF7: ↑ nuclear YAP | sub-μM | (S)-PFI-2 |
Type 1 PRMTs | MS02337 | 30,8 (PRMT1,6) | MCF7 (PRMT1), HEK293 (PRMT6b): ↓ H4R3me2a, ↓ H3R2me2a | 9,56 (PRMT1,6) | MS094 |
PRMT3 | SGC70734 | 31 | HEK293, PRMT3b: ↓ H4R3me2a | 91 | XY1 |
PRMT4 | TP-06464 | <10 | HEK293: ↓ Med12me2a, ↓ Baf155me2a | 43, 340 | TP-064N |
PRMT4 | SKI-73d,e | 11 | MCF-7: ↓ Med12me2a | 540 | SKI-73N |
PRMT4,6 | MS04965 | 44,63 | HEK293: ↓ Med12me2a (PRMT4), ↓ H3R2me2a (PRMT6b) | 1400, 970 | MS049N |
PRMT5 | GSK59128 | 11 | Z138: ↓ SmD3me2s | 56 | SGC2096 |
PRMT5 | LLY-28331 | 22 | MCF7: ↓ SmBB'Rme2s | 30 | LLY-284 |
PRMT7 | SGC3027d,f | <2.5 | C2C12, PRMT7b: ↓ HSP70R469me | 2400 | SGC3027N |