Fig. 5
From: Retrotranspositional landscape of Asian rice revealed by 3000 genomes
Discriminant analysis of the 3000 genomes using TIPs. Discriminant analysis of principal components was performed using TE insertions for all the 32 TE families as a function of varietal groups in green for the Indica varieties and in blue for the Japonica varieties (a) or in function of geographical zones (b). Zone 1 (blue): Japan and Korea; zone 2 (red): China; zone 3 (green): South-East Asia—Thailand, Laos, Malaysia, Cambodia, and Myanmar; zone 4 (cyan): Asian peninsula—Taiwan, Indonesia, Philipines, and Australia; zone 5 (purple): Pakistan, India, Bangladesh, Nepal, Egypt, and Sri Lanka; zone 6: Europe; zone 7 (brown): Madagascar; zone 8 (black): Africa; zone 9: North America; and zone 10 (orange): South America
