Table 1 Crystallographic and structure refinement statistics

From: Anti-LRP5/6 VHHs promote differentiation of Wnt-hypersensitive intestinal stem cells

 

LRP6 P3E3P4E4: L-P2-B10

LRP6 P3E3P4E4: L-P2-D07

Data collection

ESRF-ID23-2

ESRF-ID29

Space group

P 65

P 21 21 21

Cell dimensions

  a, b, c (Å)

118.3, 118.3, 249.9

92.8, 105.9, 164.2

  α, β, γ (°)

90.0, 90.0, 120.0

90.0, 90.0, 90.0

Wavelength (Å)

0.8731

1.0723

Resolution (Å)a

79.2–2.6 (2.7–2.6)

82.1–2.9 (3.0–2.9)

No. of copies per ASU

2

1

Total no. of reflections

119,140

73,165

No. of unique reflections

60,031

36,612

Completenessa

98.83 (89.96)

99.96 (100)

Multiplicitya

2.0 (1.9)

2.0 (2.0)

I/σIa

6.8 (1.4)

9.1 (1.6)

Rmerge (%)a

7.6 (51.08)

2.8 (35.09)

CC1/2 (%)a

99.1 (50.2)

100 (49.2)

Refinement

Rwork/Rfree (%)

19.8/24.7

20.9/25.1

Average B-factor (A2)

  Protein

47.6

114.3

R.m.s. deviations

  Bond lengths (Å)

0.003

0.002

  Bond angles (°)

0.99

0.53

Ramachandran plot

  Favored (%)

94.2

91.3

  Allowed (%)

5.8

8.77

  Disallowed (%)

0.0

0.0

  Rotamer outliers (%)

0.4

0.97

  1. Rfree value calculations are based on 5% randomly selected reflections. 5% of reflections were used for calculation of Rfree
  2. ASU: asymmetric unit, CC: correlation coefficient, R.m.s.d.: root mean square deviations
  3. aHighest resolution shell in parentheses