Table 1 Ribosomal protein domains found in cultivated viruses
From: Numerous cultivated and uncultivated viruses encode ribosomal proteins
Domain | Protein | Name (family) | Genome length, kb | RP accession, length (aa) | Coverage, identity (%) | HHpred Probability (%) | E-value |
|---|---|---|---|---|---|---|---|
Ribosomal_S30 | eS30 | Finkel–Biskis–Reilly murine sarcoma virus (R) | 3,811 | NP_598374, 133 | 85, 86 | 99.92 | 2.2E-26 |
Ribosomal_S21 | bS21 | Pelagibacter phage HTVC008M (M) | 147,284 | AGE60443, 67 | 59, 46 | 99.81 | 2.7E-19 |
Ribosomal_L9_N | bL9 | Mycobacterium phage 32HC (S) | 50,781 | AHJ86298, 86 | 33, 40 | 98.32 | 4.3E-07 |
Ribosomal_L12 | bL12 | Dinoroseobacter phage DFL12phi1 (P) | 75,028 | AHX01035, 106 | 74, 32 | 99.9 | 1.0E-23 |
Erwinia phage Ea9–2 (P) | 75,568 | AHI60108, 724 | 9, 32 | 96.87 | 6.3E-03 | ||
Ralstonia phage RSB3 (P) | 44,578 | BAN92321, 98 | 59, 32 | 99.77 | 2.2E-18 | ||
Roseophage DSS3P2 (P) | 74,611 | ACL81275, 107 | 62, 28 | 99.44 | 3.7E-13 | ||
Salmonella phage FSL SP-058 (P) | 72,394 | AGF88397, 418 | 16, 34 | 96.05 | 1.8E-01 | ||
Salmonella phage FSL SP-076 (P) | 72,098 | AGF88198, 418 | 15, 36 | 96.21 | 2.6E-02 | ||
Sulfitobacter phage phiCB2047-B (P) | 74,485 | AGH07436, 126 | 25, 47 | 97.06 | 1.8E-03 | ||
Ribosomal_S30AE | HPF | Cronobacter phage vB CsaM GAP32 (M) | 358,663 | AFC21633, 111 | 71, 34 | 99.96 | 4.2E-28 |
Enterobacteria phage vB EcoM-FV3 (M) | 136,947 | AEZ65272, 105 | 74, 35 | 99.92 | 1.5E-23 | ||
Escherichia coli bacteriophage rv5 (M) | 137,947 | ABI79209, 105 | 74, 33 | 99.96 | 1.3E-27 | ||
Escherichia phage 2 JES-2013 (M) | 136,910 | AGM12525, 105 | 74, 32 | 99.96 | 3.0E-28 | ||
Escherichia coli O157 typing phage 14 (M) | 131,952 | AKE47110, 105 | 74, 33 | 99.96 | 3.4E-28 | ||
Escherichia phage vB EcoM FFH2 (M) | 139,020 | AEZ65272, 105 | 74, 35 | 99.93 | 7.9E-24 |
