Fig. 4 | Nature Communications

Fig. 4

From: Constructing a synthetic pathway for acetyl-coenzyme A from one-carbon through enzyme design

Fig. 4

Computational analysis and functional identification of the acetyl-phosphate synthase. a The formation of DHEThDP from F6P/X5P and glycolaldehyde. The solid arrows represent the formation mechanism of DHEThDP in ref. 39; the dashed arrows indicate the predicted process using glycolaldehyde as substrate. b The identification of ACPS. The maximum-likelihood phylogenetic tree of the selected eight PKs was constructed by MEGA47. The details of the selected PKs are present in the supplementary note and supplementary Fig. 10. The activity of each protein was detected by adding 0.5 mg mL−1 enzyme and 10 mM glycolaldehyde. AcP acetyl phosphate, PK phosphoketolase, Production of AcP (µmol min−1 mg−1): the amount of AcP produced per mg enzyme per minute; Control: no enzyme was added in the reaction system; Error bars represent s.d. (standard deviation), n = 3. c The energy profile for DHEThDP formation process. IM1 and IM2 represent intermediate 1 and 2 during the formation process; TIM represents the tautomerized intermediate between IM1 and IM2; TS1 and TS2 represent the transition states. Source data are provided as a Source Data file.

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