Table 1 Data collection and refinement statistics
Apo DrPARG | ADP-ribose-bound DrPARG | ADP-ribose-bound DrPARG | ADP-ribose-bound DrPARG | ADP-ribose-bound DrPARG | ADP-ribose-bound T267K | ADP-ribose-bound T267R | |
|---|---|---|---|---|---|---|---|
PDB code | 5ZDA | 5ZDB | 5ZDC | 5ZDD | 5ZDE | 5ZDF | 5ZDG |
Data collection | |||||||
Space group | P212121 | P21 | P32 | P212121 | P3221 | P3221 | P3221 |
Cell dimensions | |||||||
a, b, c (Å) | 45.1, 71.1, 72.3 | 43.3, 97.4, 59.4 | 108.5, 108.5, 131.0 | 42.7, 56.9, 97.5 | 62.9, 62.9, 131.3 | 63.2, 63.2, 130.9 | 63.0, 63.0, 131.0 |
α, β, γ (°) | 90, 90, 90 | 90, 93.7, 90 | 90, 90, 120 | 90, 90, 90 | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 |
Resolution (Å) | 26.20–1.55 (1.61–1.55)a | 25.95–1.97 (2.04–1.97)a | 28.02–1.98 (2.05–1.98)a | 27.98–2.73 (2.85–2.73)a | 27.23–2.81 (2.91–2.81)a | 28.44–2.50 (2.59–2.50)a | 28.40–2.60 (2.69–2.60)a |
R merge | 0.057 (0.487) | 0.086 (0.502) | 0.046 (0.512) | 0.117 (0.336) | 0.088 (0.507) | 0.147 (0.508) | 0.054 (0.579) |
I/σI | 33.9 (4.3) | 14.3 (2.0) | 23.1 (2.4) | 13.6 (2.87) | 30.1 (5.1) | 15.4 (2.2) | 29.8 (2.6) |
Completeness(%) | 97.8 (100.0) | 98.2 (91.1) | 99.1 (100.0) | 98.6 (90.7) | 99.9 (100.0) | 98.8 (90.4) | 99.9 (99.9) |
Redundancy | 7.8 (8.1) | 3.8 (3.3) | 2.9 (2.8) | 5.2 (3.2) | 9.6 (8.9) | 6.9 (3.8) | 5.3 (5.3) |
Refinement | |||||||
Resolution (Å) | 26.20–1.55 | 25.95–1.97 | 28.02–1.98 | 27.98–2.73 | 27.23–2.81 | 28.44–2.50 | 28.40–2.60 |
No. of reflections | 33,710 | 32,430 | 112,158 | 6555 | 7429 | 9872 | 8899 |
Rwork/Rfree | 0.169/0.190 | 0.155/0.197 | 0.145/0.193 | 0.161/0.250 | 0.184/0.271 | 0.200/0.250 | 0.185/0.251 |
No. of atoms | |||||||
Protein | 1910 | 3873 | 11,576 | 1916 | 1949 | 1915 | 1917 |
Ligand/ion | 5 | 72 | 231 | 41 | 36 | 36 | 36 |
Water | 285 | 266 | 1283 | 3 | — | 24 | 8 |
B-factors | |||||||
Protein | 23.45 | 32.72 | 28.29 | 40.51 | 50.23 | 53.87 | 51.59 |
Ligand/ion | 27.81 | 24.15 | 24.53 | 61.59 | 50.42 | 37.73 | 48.48 |
Water | 35.06 | 39.46 | 37.81 | 37.66 | — | 38.10 | 42.31 |
R.m.s. deviations | |||||||
Bond lengths (Å) | 0.006 | 0.008 | 0.008 | 0.010 | 0.009 | 0.009 | 0.009 |
Bond angles (°) | 0.81 | 0.87 | 0.94 | 1.07 | 1.00 | 1.04 | 1.02 |