Table 1 Data collection and refinement statistics

From: Structural and biochemical evidence supporting poly ADP-ribosylation in the bacterium Deinococcus radiodurans

 

Apo DrPARG

ADP-ribose-bound DrPARG

ADP-ribose-bound DrPARG

ADP-ribose-bound DrPARG

ADP-ribose-bound DrPARG

ADP-ribose-bound T267K

ADP-ribose-bound T267R

PDB code

5ZDA

5ZDB

5ZDC

5ZDD

5ZDE

5ZDF

5ZDG

Data collection

 Space group

P212121

P21

P32

P212121

P3221

P3221

P3221

 Cell dimensions

      a, b, c (Å)

45.1, 71.1, 72.3

43.3, 97.4, 59.4

108.5, 108.5, 131.0

42.7, 56.9, 97.5

62.9, 62.9, 131.3

63.2, 63.2, 130.9

63.0, 63.0, 131.0

     α, β, γ (°)

90, 90, 90

90, 93.7, 90

90, 90, 120

90, 90, 90

90, 90, 120

90, 90, 120

90, 90, 120

 Resolution (Å)

26.20–1.55 (1.61–1.55)a

25.95–1.97 (2.04–1.97)a

28.02–1.98 (2.05–1.98)a

27.98–2.73 (2.85–2.73)a

27.23–2.81 (2.91–2.81)a

28.44–2.50 (2.59–2.50)a

28.40–2.60 (2.69–2.60)a

 R merge

0.057 (0.487)

0.086 (0.502)

0.046 (0.512)

0.117 (0.336)

0.088 (0.507)

0.147 (0.508)

0.054 (0.579)

 I/σI

33.9 (4.3)

14.3 (2.0)

23.1 (2.4)

13.6 (2.87)

30.1 (5.1)

15.4 (2.2)

29.8 (2.6)

Completeness(%)

97.8 (100.0)

98.2 (91.1)

99.1 (100.0)

98.6 (90.7)

99.9 (100.0)

98.8 (90.4)

99.9 (99.9)

 Redundancy

7.8 (8.1)

3.8 (3.3)

2.9 (2.8)

5.2 (3.2)

9.6 (8.9)

6.9 (3.8)

5.3 (5.3)

Refinement

 Resolution (Å)

26.20–1.55

25.95–1.97

28.02–1.98

27.98–2.73

27.23–2.81

28.44–2.50

28.40–2.60

 No. of reflections

33,710

32,430

112,158

6555

7429

9872

8899

 Rwork/Rfree

0.169/0.190

0.155/0.197

0.145/0.193

0.161/0.250

0.184/0.271

0.200/0.250

0.185/0.251

 No. of atoms

     Protein

1910

3873

11,576

1916

1949

1915

1917

     Ligand/ion

5

72

231

41

36

36

36

     Water

285

266

1283

3

24

8

 B-factors

     Protein

23.45

32.72

28.29

40.51

50.23

53.87

51.59

     Ligand/ion

27.81

24.15

24.53

61.59

50.42

37.73

48.48

     Water

35.06

39.46

37.81

37.66

38.10

42.31

 R.m.s. deviations

     Bond lengths (Å)

0.006

0.008

0.008

0.010

0.009

0.009

0.009

     Bond angles (°)

0.81

0.87

0.94

1.07

1.00

1.04

1.02

  1. aValues within parentheses are for highest-resolution shell
  2. R.m.s. root mean square, DrPARG PARG structure from Deinococcus radiodurans