Fig. 7
From: Primed histone demethylation regulates shoot regenerative competency
Identification of LDL3 target genes involved in shoot regeneration. a Venn diagram of the genes with hyper H3K4me2 in ldl3-1 compared with WT (C14), the genes upregulated upon shoot induction in WT (p < 0.01, FC > 1.25) (S1), the genes down-regulated in ldl3-1 compared with WT upon shoot induction (p < 0.01, FC < 0.8) (UGs_S1), and LDL3-bound genes (C14). b Heat maps for gene expression levels (z-score of RPM) of putative LDL3 targets (16 genes) in WT and ldl3-1 before and after shoot induction. c, d Shoot regeneration phenotype in the three mutants for three putative LDL3 target genes. Values are mean ± s.d. **p < 0.01 (Student’s t-test). 71 < n < 80. Scale bars: 5 mm. e Histone H3K4 methylation and LDL3 binding patterns in putative target genes. Boxes, exons; thin lines, introns; bold lines at both ends, 5′ or 3′ UTR. See also Supplementary Fig. 7, Supplementary Data 5 and 6. Source data are provided as a Source Data file
