Table 1 Summary of 37 candidate genes associated with main flavor-related traits in tomato fruita
Trait | Chr | BP | Ref | Alt | P | I 2 | Locus name | Candidate gene |
|---|---|---|---|---|---|---|---|---|
Citrate | 1 | 1749084 | c | g | 3.62 × 10−13 | 0 | Solyc01g007090 | Aluminum-activated malate transporter |
Citrate | 2 | 47904426 | a | g | 4.30 × 10−13 | 97.9 | Solyc02g084820 | Glycosyl transferase group 1 |
Citrate | 3 | 52998165 | a | c | 1.84 × 10−15 | 0 | Solyc03g083090 | Glycogen synthase |
Citrate | 6 | 44955568 | a | c | 7.46 × 10−27 | 98.4 | Solyc06g072920 | Aluminum-activated malate transporter |
Citrate | 7 | 63601724 | t | g | 4.70 × 10−12 | 0 | Solyc07g055840 | Citrate synthase |
Fructose | 1 | 3327330 | a | g | 6.37 × 10−11 | 0 | Solyc01g009150 | Glycosyl hydrolase |
Fructose | 5 | 63485334 | c | g | 4.68 × 10−10 | 0 | Solyc05g053400a | Glucosyltransferase |
Fructose | 7 | 63757414 | a | c | 4.28 × 10−09 | 0 | Solyc07g055840 | Citrate synthase |
Fructose | 8 | 64470216 | a | g | 2.33 × 10−10 | 96.2 | Solyc08g081420 | Glycosyltransferase-like protein |
Fructose | 10 | 422707 | a | t | 6.27 × 10−10 | 0 | Solyc10g005510a | Glyceraldehyde-3-phosphate dehydrogenase |
Fructose | 10 | 65465775 | t | c | 6.84 × 10−09 | 0 | Solyc10g086720 | Fructose-1 6-bisphosphatase class 1 |
Glucose | 1 | 1998383 | a | g | 2.36 × 10−10 | 0 | Solyc01g007910 | Succinyl-CoA ligase |
Glucose | 2 | 43844073 | t | c | 2.87 × 10−09 | 96.7 | Solyc02g079220 | Solute carrier family facilitated glucose transporter member 8 |
Glucose | 4 | 911809 | a | g | 6.62 × 10−09 | 0 | Solyc04g007160 | Alpha-glucosidase |
Glucose | 8 | 58158082 | a | g | 4.99 × 10−08 | 0 | Solyc08g069060 | Beta-1 3-galactosyltransferase 6 |
Glucose | 10 | 332069 | t | g | 1.20 × 10−09 | 0 | Solyc10g005510a | Glyceraldehyde-3-phosphate dehydrogenase |
Malate | 1 | 2650772 | t | c | 2.08 × 10−15 | 0 | Solyc01g008550 | Cinnamoyl CoA reductase-like protein |
Malate | 9 | 72364359 | a | t | 1.34 × 10−15 | 0 | Solyc09g098590 | Sucrose synthase |
Malate | 11 | 55879120 | a | c | 7.14 × 10−16 | 0 | Solyc11g072700 | Glycosyltransferase-like protein |
Malate | 12 | 1824226 | t | g | 1.75 × 10−19 | 0 | Solyc12g008430 | Malic enzyme |
Asparagine | 2 | 54365596 | a | g | 3.72 × 10−10 | 94 | Solyc02g093550a | Methyltransferase type 11 |
Asparagine | 5 | 62468569 | a | g | 8.92 × 10−09 | 0 | Solyc05g052170 | Acetyltransferase GNAT family protein |
Asparagine | 12 | 64463407 | t | c | 1.13 × 10−09 | 0 | Solyc12g089350 | GDSL esterase/lipase |
Aspartate | 8 | 60307917 | t | c | 6.35 × 10−09 | 0 | Solyc08g076350 | Abhydrolase domain-containing protein |
Aspartate | 11 | 4008385 | t | g | 7.24 × 10−11 | 0 | Solyc11g010960 | Alcohol dehydrogenase |
Aspartate | 12 | 37536492 | a | t | 9.16 × 10−08 | 0 | Solyc12g044940a | Short-chain dehydrogenase/reductase |
Phenylalanine | 11 | 4002767 | t | c | 9.57 × 10−09 | 0 | Solyc11g010960 | Alcohol dehydrogenase |
Proline | 3 | 66798980 | t | g | 2.39 × 10−09 | 0 | Solyc03g117770a | Serine incorporator 1 |
Serine | 3 | 69913055 | a | g | 3.06 × 10−14 | 0 | Solyc03g121910 | Threonine synthase |
Geranyl acetone | 2 | 40883244 | a | g | 6.00 × 10−15 | 0 | Solyc02g081330 | Phytoene synthase 2 |
Hexenal | 1 | 1083181 | c | g | 1.45 × 10−10 | 0 | Solyc01g006540 | Lipoxygenase |
Methyl salicylate | 9 | 69293875 | a | g | 2.34 × 10−19 | 0 | Solyc09g089580 | 1-aminocyclopropane-1-carboxylate oxidase-like protein |
1-penten-3-one | 5 | 3036212 | a | g | 7.07 × 10−09 | 0 | Solyc05g008800b | Lipid phosphate phosphatase 3 |
2-methyl-1-butanol | 6 | 37782796 | a | g | 5.50 × 10−09 | 0 | Solyc06g059850 | 3-methyl-2-oxobutanoate dehydrogenase |
6-methyl-5-hepten-2-one | 3 | 3212583 | t | c | 6.76 × 10−26 | 0 | Solyc03g025720 | Long-chain-fatty-acid--CoA ligase |
6-methyl-5-hepten-2-one | 4 | 60345897 | a | t | 3.00 × 10−11 | 0 | Solyc04g074360 | UDP-glucuronosyltransferase |
6-methyl-5-hepten-2-one | 10 | 61007386 | a | g | 9.28 × 10−09 | 0 | Solyc10g079470 | L-galactono--lactone dehydrogenase |
