Table 3 Model variables and parameters

From: Reduced nitrogenase efficiency dominates response of the globally important nitrogen fixer Trichodesmium to ocean acidification

Symbol

Unit

Description

Value

Input variables

Q Fe

μmol Fe (mol C)−1

Total intracellular Fe quota

 

pH

 

pH value in medium

 

pCO2

μatm

Partial pressure of medium dissolved CO2

 

Parameters to be optimized

\(f_{{\mathrm{Fe}}}^{{\mathrm{PS}}}\)

 

Fraction of metabolic Fe allocated to photosystems

 

\(f_{\mathrm{E}}^{{\mathrm{CF}}}\)

 

Fraction of produced energy allocated to C fixation

 

Constant parameters

\({\mathrm{pH}}_{{\mathrm{bsl}}}\)

 

Medium pH value under baseline condition

8.02

\(p{\mathrm{CO}}_{2,{\mathrm{bsl}}}\)

μatm

Medium pCO2 under baseline condition

400

\(Q_{{\mathrm{Fe}},{\mathrm{bsl}}}^{\mathrm{c}}\)

μmol Fe (mol C)−1

Critical QFe for Fe luxury uptake under baseline condition

24.4

OAST

 

Coefficient representing the strength of OA impact on Fe storage threshold \(Q_{{\mathrm{Fe}}}^{\mathrm{c}}\)

0.71

f ST

 

Portion of luxury Fe uptake

90%

E max

kJ (mol C)−1 d−1

Maximum cellular energy production rate

2060

\(K_{{\mathrm{Fe}}}^{{\mathrm{PS}}}\)

μmol Fe (mol C)−1

Half-saturating coefficient for energy production

35

ecCF

kJ (mol C)−1

Energy consumption rate of carbon fixation

590

f BC

 

Contribution of HCO3− to total inorganic carbon uptake under baseline condition

80%

l k

 

Percentage of total inorganic carbon uptake leaked as CO2

50%

OAlk

 

Coefficient representing relative reduction of CO2 leakage with increasing medium CO2

0.1

ecCCM

kJ (mol C)−1

Energy consumption rate of HCO3− transportation

60

ecAtS

kJ (mol C)−1

Coefficient representing energy consumption rate for anti-stress

780

ecMT

kJ (mol C)−1

Energy consumption rate of maintenance

90

ecNF

kJ (mol N)−1

Energy consumption rate of N2 fixation

1 110

IUEMT

mol C (μmol Fe)−1 d−1

Fe use efficiency in maintenance

0.12

\(Q_{{\mathrm{Fe}},{\mathrm{ref}}}^{{\mathrm{NF}}}\)

μmol Fe (mol C)−1

Reference nitrogenase Fe used in representing impact of pH on nitrogenase efficiency

25

NFmax

mol N (mol C)−1 d−1

Maximum N2 fixation rate

0.37

\(K_{{\mathrm{Fe}}}^{{\mathrm{NF}}}\)

μmol Fe (mol C)−1

Half-saturating coefficient for N2 fixation

91

\(r_{\mathrm{N}}^{\mathrm{C}}\)

mol C (mol N)−1

Carbon to nitrogen ratio of Trichodesmium cell

5.6