Table 2 The accuracy of assigning TADs of the 3D chromosome models calculated by GEM-FISH (which uses both Hi-C and FISH data) and GEM (which uses only Hi-C data) to the two different compartments

From: Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes

 

GEM-FISH

GEM

Chr20

28/30

22/30

Chr21

32/34

30/34

Chr22

22/27

22/27

ChrXa

39/40

35/40

ChrXi

37/40

24/40

  1. The table entries are filled with the format of “number of correctly assigned TADs/total number of TADs”. In GEM, due to the availability of only the non-allele-specific Hi-C maps (which do not distinguish between ChrXa and ChrXi) for the IMR90 cell line8, we only considered one 3D model for ChrX
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