Table 1 Data collection and refinement statistics
PCM1:GABARAP | PCM1:GABARAP | ATG13:GABARAP | ULK1:GABARAP | |
|---|---|---|---|---|
PDB ID | 6HYL | 6HYM | 6HYN | 6HYO |
Resolution range | 54.32–1.55 (1.61–1.55) | 45.59–1.86 (1.92–1.86) | 41.29–1.14 (1.18–1.14) | 41.12–1.07 (1.10–1.07) |
Space group | P2 1 2 1 2 1 | P4 3 | I23 | I23 |
Unit cell | 53.6 65.9 95.7 90 90 90 | 80.8 80.8 55.1 90 90 90 | 101.1 101.1 101.1 90 90 90 | 100.7 100.7 100.7 90 90 90 |
Total reflections | 257,013 (24,635) | 140,914 (13,154) | 1,120,671 (76,985) | 1,385,490 (108,563) |
Unique reflections | 49,150 (4840) | 30,131 (3045) | 62,488 (6252) | 74,520 (7428) |
Multiplicity | 5.2 (5.1) | 4.7 (4.3) | 17.9 (12.3) | 18.6 (14.6) |
Completeness (%) | 99.0 (95.7) | 99.5 (97.7) | 99.9 (99.9) | 99.9 (100.0) |
Mean I/sigma (I) | 11.1 (1.2) | 19.7 (1.3) | 23.7 (1.0) | 23.9 (1.6) |
Wilson B-factor | 24.3 | 41.5 | 15.7 | 14.0 |
R-merge | 0.05 (0.97) | 0.02 (0.78) | 0.04 (1.82) | 0.04 (1.65) |
R-meas | 0.06 (1.08) | 0.02 (0.89) | 0.04 (1.90) | 0.05 (1.71) |
R-pim | 0.02 (0.47) | 0.01 (0.42) | 0.01 (0.54) | 0.01 (0.44) |
CC1/2 | 0.998 (0.69) | 1 (0.65) | 1 (0.55) | 1 (0.62) |
CC* | 1 (0.90) | 1 (0.88) | 1 (0.84) | 1 (0.87) |
Reflections used in refinement | 48,794 (4680) | 30,008 (2978) | 62,465 (6252) | 74,519 (7428) |
Reflections used for R-free | 2397 (261) | 1524 (192) | 3077 (326) | 3593 (400) |
R-work | 0.24 (0.50) | 0.18 (0.37) | 0.22 (0.39) | 0.14 (0.23) |
R-free | 0.28 (0.57) | 0.21 (0.40) | 0.23 (0.41) | 0.16 (0.24) |
Number of non-hydrogen atoms | 2443 | 2366 | 1390 | 1414 |
Macromolecules | 2209 | 2146 | 1219 | 1191 |
Ligands | 28 | 52 | ||
Solvent | 234 | 192 | 171 | 171 |
Protein residues | 260 | 264 | 132 | 131 |
RMS (bonds) | 0.00 | 0.02 | 0.01 | 0.01 |
RMS (angles) | 0.52 | 1.24 | 1.30 | 1.39 |
Ramachandran favored (%) | 99.6 | 99.6 | 99.2 | 98.5 |
Ramachandran allowed (%) | 0.4 | 0.4 | 0.8 | 1.5 |
Ramachandran outliers (%) | 0 | 0 | 0 | 0 |
Average B-factor | 41.4 | 53.0 | 27.5 | 20.8 |
Macromolecules | 41.1 | 52.6 | 26.3 | 17.9 |
Ligands | 63.3 | 39.7 | ||
Solvent | 44.1 | 56.4 | 36.2 | 35.6 |