Fig. 3
Comparison of different B. napus genetic clusters. a Nucleotide diversity and FST across six genetic clusters. The value in each circle shows nucleotide diversity for this cluster; the value on each line represents the FST between WEAm and another cluster. b Decay of linkage disequilibrium (LD) in each genetic cluster measured by r2. c Venn diagram of differentially expressed genes (DEGs) between WEAm and other genetic clusters. d Nucleotide diversity in each genetic cluster based on separated A and C sub-genomes. The box represents the interquartile range. Band inside each box represents median. Number inside each box represents the mean value. The whiskers represent the minimum and maximum values. e The ratio of (DEGs in A sub-genome)/(DEGs in C sub-genome). *p-value < 0.05 (χ2 test); **p-value < 0.01 (χ2 test). 372,546 SNPs were used for all the analysis in a, b, d. Source data of Fig. 3e are provided as a Source Data file
