Table 1 Data collection and refinement statistics

From: Chemical logic of MraY inhibition by antibacterial nucleoside natural products

 

Carbacaprazamycina (6OYH)

Capuramycinb (6OYZ)

3′-hydroxymureidomycin Ac (6OZ6)

Data collection

 Space group

P21

P21

P21

Cell dimensions

 a,b,c (Å)

93.9 129.6 129.4

93.8 128.1 129.5

94.9 130.0 130.2

 α,β,γ (°)

90.0 109.3 90.0

90.0 110.8 90.0

90.0 109.4 90.0

 Resolution (Å)

43.94–2.95 (3.06–2.95)

87.23–3.62 (3.75–3.62)

72.55–3.70 (3.83–3.70)

 R-pim

0.079 (0.63)

0.16 (0.52)

0.30 (4.89)

 Mean I/sigma(I)

12.86 (1.20)

10.25 (1.37)

3.55 (1.25)

 CC1/2

0.89 (0.44)

0.96 (0.34)

0.97 (0.66)

 Completeness (%)

98.70 (91.28)

99.95 (99.82)

100.00(100.00)

 Completeness (%)d

—

—

91.15(68.42)

 Ellipsoidal completeness (%)

—

—

100.00(99.4)

 Multiplicity

4.3 (2.6)

15.2 (9.6)

15.4 (11.6)

Refinement

 Resolution (Å)

43.94–2.95 (3.06–2.95)

87.64–3.62 (3.749–3.62)

72.55–3.70 (3.832–3.70)

 No. reflections

60,824 (5560)

32,752 (3238)

29,150 (2190)

 Rwork/Rfree (%)

24.8/26.8

27.6/30.0

25.7/30.1

 Number of non-hydrogen atoms

13,851

12,944

13,180

   Macromolecules

13,611

12,904

13,000

   Ligands

224

40

180

   Water

16

—

—

 Average B-factor

80.19

108.50

82.84

   Macromolecules

79.96

108.42

82.49

   Ligands

95.66

132.80

107.79

   Water

60.16

—

—

R.M.S deviations

 Bond lengths (Å)

0.005

0.005

0.004

 Bond angles (°)

0.73

0.74

0.70

  1. aMerged from two crystals; bMerged from five crystals; cMerged from four crystals; dAfter applying anisotropy correction with STARANISO