Table 1 Information on 38 individuals with genome-wide data

From: Ancient DNA from the skeletons of Roopkund Lake reveals Mediterranean migrants in India

Sample ID	Skeletal codes	No. libraries produced	Population label	Sex	Mitochondrial DNA haplogroup (based on Sequenom genotyping)	Mitochondrial DNA haplogroup (based on mt capture)	Y-chromosome haplogroup	Proportion of endogenous human DNA before capture (best library)	1240k coverage (average)	No. of SNPs hit on autosomes	C-to-T damage rate at terminal bases (average)	X-chromosome contamination point estimate (for males with > 200 SNPs)	Mitochondrial DNA match rate to consensus sequence	Calibrated radiocarbon dates^c	δ¹³C (‰)^d	δ¹⁵N (‰)^d
I2868	R01	3	Roopkund_A	M	M1a1c	M33d	H1a2a1	0.014	0.868	570995	0.071	..	0.996	890–982 CE	−19.40	−7.69
I2871	R04	4	Roopkund_A	F	M3C1	M3c1a	..	0.005	0.579	441880	0.049	..	0.997	773–940 CE	−16.32	−9.77
I2872	R06	4	Roopkund_A	F	M3c2	M3c2	..	0.003	0.199	196393	0.046	..	1.000	773–940 CE	−19.00	−9.24
I3342	R08	1	Roopkund_A	M	M3a2	M3a2	H1a1d2	0.007	0.577	403739	0.047	0.013	1.000	773–940 CE	−18.94 (−18.88)	−9.69 (−9.85)
I3343	R10	1	Roopkund_A	F	M3	M3	..	0.006	0.223	203058	0.055	..	1.000	773–890 CE	−19.74	−9.99
I3344	R11	1	Roopkund_A	F	U	U2c1	..	0.003	0.105	111184	0.049	..	1.000	775–890 CE	−11.45	−8.71
I3346	R15	1	Roopkund_A	M	..	M30c	E1b1b1	0.004	0.304	271560	0.065	0.008	1.000	717–889 CE	−15.93	−10.29
I3349	R17	1	Roopkund_A	F	..	M5a	..	0.004	0.133	136268	0.059	..	0.998	770–945 CE	−10.74	−9.58
I3351	R19	1	Roopkund_A	M	M3a1	M4	J^b	0.006	0.044	50278	0.057	..	0.994	770–887 CE	−14.47 (−14.42)	−9.39 (−9.63)
I3352	R20	1	Roopkund_A	M	HV	HV14	R2a3a2b2c	0.017	1.476	591844	0.041	0.004	0.998	689–876 CE	−16.27	−9.13
I3402	R25	1	Roopkund_A	M	M5^a	U1a1^a	H3b	0.002	0.118	125762	0.036	..	1.000	770–887 CE	−17.18	−10.36
I3406	R43	1	Roopkund_A	M	M30	M30	J2a1	0.016	0.295	251527	0.045	..	0.999	885–980 CE	−18.46 (−18.07)	7.95 (−8.23)
I3407	R44	1	Roopkund_A	M	M3a1	M3a1	H1a1d2	0.011	0.105	110441	0.045	..	0.976	775–961 CE	−18.22 (−18.27)	−9.85 (−9.69)
I6934	R45	1	Roopkund_A	F	..	..	..	0.034	0.861	521678	0.033	..	1.000	773–890 CE	−16.53	−8.41
I6938	R51	1	Roopkund_A	F	X	X2p	..	0.011	0.481	405124	0.058	..	0.999	694–875 CE	−18.62 (−18.16)	−8.25 (−8.4)
I6941	R55	1	Roopkund_A	M	J1b1a1	J1b1a1	..	0.009	0.590	452228	0.044	−0.001	1.000	894–985 CE	−10.13	−8.90
I6942	R57	1	Roopkund_A	M	P4b1	R30b2a	..	0.008	0.602	470065	0.047	−0.001	1.000	770–887 CE	−18.66 (−18.42)	−8.22 (−8.33)
I6943	R61	1	Roopkund_A	M	M3a1	M3a1	..	0.007	0.133	145489	0.064	..	0.999	675–769 CE	−10.10	−8.24
I6944	R62	1	Roopkund_A	F	U2e3	U4d3	..	0.009	0.340	313369	0.055	..	1.000	726–885 CE	−18.00 (−18.10)	−8.58 (−7.9)
I6945	R64	1	Roopkund_A	F	M4″67	M30 + 16234	..	0.007	0.035	40150	0.045	..	0.997	687–870 CE	−17.08	−8.92
I6946	R65	1	Roopkund_A	M	U2a1	U8b1a1	..	0.005	0.349	328001	0.055	−0.002	1.000	773–890 CE	−10.21	−10.09
I7035	R68	1	Roopkund_A	F	U7	U7a2	..	0.008	0.565	446699	0.041	..	0.999	889–971 CE	−16.74 (−16.50)	−10.19 (−10.21)
I7036	R69	1	Roopkund_A	M	H	H13a2a	..	0.009	0.370	342426	0.057	0.005	1.000	778–988 CE	−18.59	−9.33
I2869	R02	4	Roopkund_B	M	H	H6b1	J1a3a	0.036	0.782	578890	0.057	..	0.997	1668–1945 CE	−18.69	−10.89
I2870	R03	2	Roopkund_B	F	T1	T1a	..	0.024	0.028	31880	0.039	..	0.938	1706–1915 CE	−18.67	−11.15
I3345	R13	1	Roopkund_B	M	H1	H1	R1a1a1b1a2b	0.056	1.547	706651	0.059	0.002	0.997	1681–1939 CE	−18.93	−10.76
I3348	R16	1	Roopkund_B	F	H1	H1c	..	0.006	0.409	352584	0.051	..	1.000	1682–1932 CE	−19.23	−9.21
I3350	R18	1	Roopkund_B	M	H	H60a	G2a2b2a1a1c1a2	0.031	1.349	614489	0.069	0.004	0.995	1675–1943 CE	−19.41 (−19.10)	−9.95 (−10.02)
I3401	R22	1	Roopkund_B	M	N2	W1	R1b1a^b	0.005	0.049	56291	0.056	..	1.000	..	..	..
I3403	R39	1	Roopkund_B	M	N	X2d	T1a2	0.018	0.492	379935	0.035	0.005	0.995	1691–1925 CE	−18.60 (−18.19)	−10.77 (−10.61)
I3404	R40	1	Roopkund_B	M	H	H12	E1b1b1b2	0.040	1.077	541763	0.041	0.006	0.997	1706–1915 CE	−19.23	−9.62
I3405	R42	1	Roopkund_B	F	J1b	J1b	..	0.019	0.514	346216	0.031	..	1.000	1656-… CE	−19.72	−10.07
I6935	R46	1	Roopkund_B	F	HV	..	..	0.017	0.627	524922	0.060	..	0.997	1668–1945 CE	−18.97	−8.91
I6936	R48	1	Roopkund_B	M	M2a1^a	H1^b	..	0.034	1.371	728448	0.043	0.005	0.998	1681–1939 CE	−18.79	−9.79
I6937	R49	1	Roopkund_B	F	H12	H12a	..	0.026	0.837	584656	0.035	..	1.000	1661-… CE	−19.56	−8.93
I6939	R53	1	Roopkund_B	M	H1	H1	..	0.008	0.605	476797	0.037	0.006	0.999	1680–1939 CE	−19.22	−10.46
I6947	R66	1	Roopkund_B	M	K	K1a	..	0.050	0.026	30592	0.025	..	0.940	1675–1943 CE	−18.95	−9.96
I6940	R54	1	Roopkund_C	M	M24	M24a	O1b1a1a1b	0.011	0.489	419098	0.047	0.022	1.000	1653-… CE	−19.25 (−18.32)	−9.98 (−9.74)

^aMitochondrial DNA haplogroups that are inconsistent between the capture and PCR-based methods are indicated
^bY-chromosome calls that should be interpreted with caution due to low coverage
^c95.4% confidence interval, rounded to nearest 5 years. Intervals that extend beyond the year 1950 CE are indicated with “..”
^dData for 11 individuals generated at the Max Planck Institute for the Science of Human History in Jena are reported in parentheses; the other data were generated at the Yale Analytical and Stable Isotope Center

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Table 1 Information on 38 individuals with genome-wide data

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