Table 2 Mitochondrial DNA haplogroup determination for 71 individuals

From: Ancient DNA from the skeletons of Roopkund Lake reveals Mediterranean migrants in India

Skeletal codes

mt-DNA haplogroup (determined via multiplex PCR analysis)

Mutational differences from rCRS (determined via multiplex PCR analysis)

Whole-genome ID

mt-DNA haplogroup (determined via whole-genome sequencing)

Population label (determined via whole-genome sequencing)

R01

M1a1c

15043, 3384, 7094, 11215

I2868

M33d

Roopkund_A

R02

H

2706, 12705, 11719, 14766, 16223

I2869

H6b1

Roopkund_B

R03

T1

16294, 16223, 12633, 11251, 15452, 8701, 15607, 1888, 14905, 11215, 9540, 8697, 16126, 12633, 4216, 709

I2870

T1a

Roopkund_B

R04

M3C1

15043, 482, 16294

I2871

M3c1a

Roopkund_A

R05

M2c

15043, 4216

..

..

..

R06

M3c2

15043, 16126, 482

I2872

M3c2

Roopkund_A

R07

U4b2

11467, 8701

..

..

..

R08

M3a2

15043, 16126, 482, 5783, 10727

I3342

M3a2

Roopkund_A

R09

U2b2

1888, 11467, 12308, 2706, 12705, 8701, 1811

..

..

..

R10

M3

15043, 16126

I3343

M3

Roopkund_A

R11

U

11467, 12308, 8701, 3714, 13188

I3344

U2c1

Roopkund_A

R12

M4″67

12007, 15043

..

..

..

R13

H1

16223, 14766, 11719, 12705, 9540, 3010, 2706

I3345

H1

Roopkund_B

R14

N1b

9540, 8701, 1598

..

..

..

R15

..

..

I3346

M30c

Roopkund_A

R16

H1

16223, 11719, 5301, 3434, 12705, 9540, 3010, 2706

I3348

H1c

Roopkund_B

R17

..

16223, 14766, 11719, 8701, 12705, 9540, 2706

I3349

M5a

Roopkund_A

R18

H

15043, 482, 4703

I3350

H60a

Roopkund_B

R19

M3a1

9540, 12705, 8701, 11719, 14766, 16223

I3351

M4

Roopkund_A

R20

HV

9540, 12705, 8701, 11719, 14766, 16223

I3352

HV14

Roopkund_A

R21

HV

709, 16126, 207, 9540, 8701

..

..

..

R22

N2

8701, 11719, 14766, 16223

I3401

W1

Roopkund_B

R23

HV

15043, 9540, 8701, 12361

..

..

..

R24

N1a1b1

1888, 15043, 7094, 7859, 11215, 8701, 16172, 13104, 16223

..

..

..

R25

M5a

709, 11083, 15043, 8502, 16274, 12810

I3402

U1a1a

Roopkund_A

R26

M2a

709, 1888, 15043

..

..

..

R28

M5

9540, 12705, 8701, 16223

..

..

..

R29

R2

15043, 16126, 5301

..

..

..

R31

M6

1888, 15043

..

..

..

R32

M5

15043

..

..

..

R33

M

12007, 15043, 5301, 3714, 13104, 16223, 16294

..

..

..

R34

M4″67

1888, 11467, 12308, 2706, 9540, 12705, 8701, 1811

..

..

..

R35

U2b

15043

..

..

..

R36

M9a2

16126, 9540, 12705, 8701, 1811, 16223

..

..

..

R37

HV

11467, 12308, 9540, 12705, 8701, 1811, 16223

..

..

..

R38

U2e

6221, 6371, 9540, 8701

..

..

..

R39

N

2706, 9540, 12705, 8701, 11719, 14766, 16223

I3403

X2d

Roopkund_B

R40

H

2706, 9540, 12705

I3404

H12

Roopkund_B

R41

T1

16223, 14766, 11719, 8701, 12705, 9540, 2706, 16126, 15043, 4491

..

..

..

R42

J1b

709, 1888, 4216, 12633, 16126, 8697, 9540, 14905, 15607, 8701, 15452, 11251, 12633, 16223

I3405

J1b

Roopkund_B

R43

M30

4216, 16126, 3010, 9540, 16612, 12705, 8701, 12406, 15452, 16069, 11251, 16223

I3406

M30

Roopkund_A

R44

M3a1

12007, 15043

I3407

M3a1

Roopkund_A

R45

..

..

I6934

..

Roopkund_A

R46

HV

15043, 16126, 482, 4703

I6935

..

Roopkund_B

R47

H

2706, 9540, 12705, 8701, 11719, 14766

..

..

..

R48

M2a1a

15670, 207, 4703

I6936

H1a

Roopkund_B

R49

H12

2706, 9540, 12705, 16223

I6937

H12a

Roopkund_B

R50

U4

11467, 12308

..

..

..

R51

X

6221, 9540, 8701

I6938

X2p

Roopkund_A

R52

M6

15043, 5082, 5301

..

..

..

R53

H1

2706, 3010, 9540, 12705, 8701, 11719, 14766, 16223

I6939

H1

Roopkund_B

R54

M24

15043, 13359, 15607

I6940

M24a

Roopkund_C

R55

J1b1a1

4216, 12007, 16126, 3010, 9540, 12612, 12705, 8701, 15452, 16069, 16172, 11251, 16223

I6941

J1b1a1

Roopkund_A

R56

M

15043

..

..

..

R57

P4b1

12007, 15043

I6942

R30b2a

Roopkund_A

R59

D4

15043, 3010, 5178, 8414

..

..

..

R60

M4″67

12007, 15043

..

..

..

R61

M3a1

15043, 16126, 482, 4703

I6943

M3a1

Roopkund_A

R62

U2e3

16223, 1811, 8701, 12705, 9540, 12308, 11467

I6944

U4d3

Roopkund_A

R63

U2e3

11467, 12308, 9540, 12705, 8701, 1811, 16223

..

..

..

R64

M4″67

12007, 15043

I6945

M30 + 16234

Roopkund_A

R65

U2a1

11467, 12308, 9540, 12705, 8701, 10609, 1811, 16223

I6946

U8b1a1

Roopkund_A

R66

K

11467, 12308, 8701, 1811, 16223

I6947

K1a

Roopkund_B

R67

M

15043

..

..

..

R68

U7

11467, 12308, 9540, 12705, 8701, 14569, 1811, 16223

I7035

U7a2

Roopkund_A

R69

H

709, 2706, 9540, 12705, 8701, 11719, 14766, 16223

I7036

H13a2a

Roopkund_A

R72

T

4216, 16126, 9540, 12705, 8701, 16223

..

..

..

R73

U

3741, 12308, 11467

..

..

..

R74

U

11467, 12308

..

..

..

R76

JT

16126, 12308

..

..

..

R77

U

11467, 12308

..

..

..

  1. aDenotes cases where mitochondrial DNA haplogroup determination differs substantially between the multiplex-PCR-based method and mitochondrial capture based analysis
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