Fig. 3 | Nature Communications

Fig. 3

From: ARID1A and PI3-kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion

Fig. 3

LtfCre0/+; (Gt)R26Pik3ca*H1047R; Arid1afl/fl gene signature correlates with invasive patient gene expression. a Distribution of TCGA-UCEC endometrioid patient tumors relative to ssGSEA score for human orthologs of LtfCre0/+; (Gt)R26Pik3ca*H1047R; Arid1afl/fl gene signature. b Clustered comparison of scaled fold-change values for signature genes between LtfCre0/+; (Gt)R26Pik3ca*H1047R; Arid1afl/fl vs. control mice and upper vs. lower quartile of UCEC endometrioid patients. EMT genes from Hallmark pathway and Mak and Tong pan-cancer gene signature are identified. c Scatter plot of Hallmark pathway GSEA Normalized Enrichment Scores (NES) from LtfCre0/+; (Gt)R26Pik3ca*H1047R; Arid1afl/fl vs. control (human orthologs) and upper quartile of UCEC endometrioid patients vs. lower quartile. d Scatter plot of Hallmark pathway GSEA NES from upper quartile of UCEC endometrioid patients vs. lower quartile and UCEC endometrioid ARID1Amut (frameshift/truncating alterations) vs. ARID1Awt. e Upper quartile ssGSEA-enriched UCEC endometrioid patients present with higher stage disease relative to all patients (p < 0.01, Chi-squared). f Upper quartile ssGSEA-enriched UCEC endometrioid patients have more invasive tumors relative to lower quartile patients (p < 0.05, unpaired Mann–Whitney U, one-tailed). Box-and-whiskers plotted in the style of Tukey without outliers

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