Fig. 2 | Nature Communications

Fig. 2

From: Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids

Fig. 2

Diversity of viral-like Rep proteins in bacteria. a Phylogenetic tree of bacterial Rep proteins and their homologs in P. pulchra. Closely related sequences are collapsed to triangles, whose side lengths are proportional to the distances between closest and farthest leaf nodes. b CLANS groups of bacterial Rep proteins and their homologs. Nodes indicate protein sequences. Lines represent sequence relationships (CLANS P-value ≤ 1e−05). The nodes belonging to the same cluster are colored with the same colors, corresponding to the clades shown in panel A. c Genome maps of integrated and extrachromosomal plasmids representing groups 1–9. Homologous genes are depicted using the same color and their functions are listed on the right side of the figure

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