Fig. 3

UMAP dimensionality reduction of CD8+T cells. a UMAP dimensionality reduction of lung CD8+T cells isolated from naive (n = 3) and PbAluc-infected (n = 3) mice at 7 dpi was color-coded (red dots represents where the CD8+T cells are located). A representative plot of three mice is shown. b Lung CD8+T cell clusters segregation by UMAP identified a total of 15 different clusters. Median expression of lung phonograph clusters across individual samples plotted and summarized as a heat map. c UMAP dimensionality reduction of lung CD8+T cells color-coded by relative intensity in each channel. The figure shows only the highly expressed markers