Table 1 Post-capture sequencing statistics of all new Yersinia pestis genomes that passed quality criteria for inclusion in phylogenetic analysis

From: Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes

Sample name	Site name	Date (AD)	Uniquely mapping reads	Endogenous DNA post enrichment (%)	Mean fold coverage	Genome covered ≥ 5-fold (%)	Average fragment length (bp)	GC content (%)
BED030.A0102	New Churchyard, London	1560–1635^a	3,624,482	36.2	80.1	93.6	102.9	48.5
BED028.A0102	New Churchyard, London	1560–1635^a	2,665,238	22.2	37.2	91.4	65.0	49.0
BED034.A0102	New Churchyard, London	1560–1635^a	1,371,698	10.5	18.3	89.1	62.2	49.2
BED024.A0102	New Churchyard, London	1560–1635^a	1,000,524	18.1	12.6	84.7	58.5	49.1
BRA001.A0101	Domlinden 12, Brandenburg an der Havel	1618–1648^b	2,387,557	23.2	23.8	92.0	46.4	47.5
LAI009.A0101	Laishevo III, Laishevo	1300–1400^b	2,549,926	23.9	28.4	92.1	51.8	48.0
LBG002.A0101	Kirchhof St. Johannis, Landsberg	1455–1632^a	621,713	27.9	7.2	66.4	54.2	49.9
MAN008.B0101	St. Leonhardi, Manching-Pichl	1283–1390^a	1,974,399	44.9	25.8	88.7	60.8	50.8
NAB003.B0101	Sankt Johans Freidhof, Nabburg	1292–1392^a	684,029	33.5	8.1	70.2	54.8	49.7
NMS002.A0101	Augustinian Friary (New Museums site), Cambridge	1475–1536^a,b	855,185	2.3	12.5	94.8	67.9	47.3
STA001.A0101	Possenhofener Str. 3, Starnberg	1433–1523^a,b	1,110,049	9.9	11.7	84.3	49.0	44.7
STN014.A0101	Nägeligasse, Stans	1485–1635^a	3,822,030	48.2	55.3	93.0	67.3	48.9
STN020.A0101	Nägeligasse, Stans	1485–1635^a	2,020,769	44.3	28.2	90.3	64.8	48.5
STN021.A0101	Nägeligasse, Stans	1485–1635^a	1,588,442	35.1	21.7	88.6	63.7	48.5
STN019.A0101	Nägeligasse, Stans	1485–1635^a	1,325,076	35.3	18.7	87.1	65.8	49.1
STN007.A0101	Nägeligasse, Stans	1485–1635^a	1,293,507	32.8	18.0	86.7	64.8	49.4
STN002.A0101	Nägeligasse, Stans	1485–1635^a	935,795	27.6	12.7	83.3	63.0	48.4
STN008.A0101	Nägeligasse, Stans	1485–1635^a	875,153	30.2	11.7	77.7	62.5	50.1
STN013.A0101	Nägeligasse, Stans	1485–1635^a	714,482	24.5	9.2	73.8	59.9	49.0
TRP002.A0101	Trente-Six Ponts 16, Toulouse	1347–1350^b	632,303	19.8	5.9	50.9	43.2	48.7

^aDates based on radiocarbon dating of collagen
^bDates based on archaeological context information

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Table 1 Post-capture sequencing statistics of all new Yersinia pestis genomes that passed quality criteria for inclusion in phylogenetic analysis

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