Fig. 3
From: Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces
Phylogenetic trees of high abundance species from core genome alignments. Maximum likelihood phylogenetic trees from core genome alignments of A. baumannii (a), E. faecium (b), K. pneumoniae (c), and P. aeruginosa (d). Tree branches are colored by hierBAPS lineage and these lineages are colored in subsequent figures. Sequence type, week, room, and surface are annotated as colored bars next to the isolate number. Week is given as grayscale with darker values corresponding to later weeks. The US room that yielded isolates is annotated dark brown. The Pakistan rooms are red, olive, turquoise, and purple for rooms 1–4, respectively. Surfaces are lime green for nursing call button, light orange for bedside rail, pink for bedside light switch, blue for room sink, and light brown for alcohol foam dispenser. Scale bars for nucleotide substitutions per site are indicated for each tree. Source data for all panels are provided in the source data file
