Table 1 Summary statistics of the methanogenic and methanotrophic archaeal bins reconstructed from hot spring samples
Bins | Nezhaarchaeota | Verstraetearchaeota | Euryarchaeota | Thaumarchaeota | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JZ bin_38 | JZ-1 bin_66 | GMQP bin_37 | ZMQR bin_18 | JZ-2 bin_200 | JZ-3 bin_106 | JZ-3 bin_107 | GMQP bin_44 | DRTY-6 bin_144 | JZ-1 bin_103 | JZ-2 bin_168 | JZ-2 bin_199 | GMQP bin_32 | JZ-2 bin_220 | |
No. of scaffolds | 11 | 3 | 2 | 6 | 38 | 49 | 48 | 7 | 67 | 63 | 10 | 20 | 20 | 54 |
Genome size (Mbp) | 1.51 | 1.52 | 1.49 | 1.27 | 1.25 | 1.33 | 1.06 | 1.17 | 1.20 | 0.95 | 1.61 | 1.24 | 1.73 | 1.23 |
GC content (%) | 43.7 | 43.6 | 45.1 | 45.2 | 47.0 | 46.7 | 46.0 | 28.1 | 46.0 | 55.8 | 43.7 | 62.5 | 41.3 | 39.0 |
No. of protein coding genes | 1571 | 1574 | 1595 | 1354 | 1390 | 1493 | 1224 | 1306 | 1369 | 1060 | 1563 | 1336 | 1967 | 1395 |
Coding density (%) | 88.5 | 88.4 | 88.2 | 87.9 | 90.1 | 89.8 | 90.1 | 93.3 | 88.4 | 95.0 | 86.7 | 94.8 | 92.8 | 91.9 |
No. of rRNAs | 2 | 3 | 3 | 3 | 1 | 3 | 1 | 3 | 3 | 1 | 3 | 1 | 2 | 0 |
No. of tRNAs | 42 | 44 | 43 | 44 | 32 | 39 | 29 | 43 | 39 | 35 | 36 | 38 | 42 | 31 |
No. of genes annotated by COGa | 1146 | 1140 | 1121 | 939 | 935 | 989 | 794 | 948 | 850 | 731 | 1113 | 941 | 1376 | 927 |
No. of genes annotated by KOa | 873 | 871 | 876 | 736 | 727 | 752 | 622 | 755 | 648 | 564 | 871 | 727 | 1063 | 723 |
Completeness (%)b | 97.55 | 99.02 | 98.53 | 98.53 | 92.06 | 90.65 | 81.31 | 100 | 82.24 | 81.15 | 99.6 | 93.46 | 100 | 97.09 |
Contamination (%)b | 2.21 | 1.47 | 2.21 | 0.74 | 0 | 0 | 0 | 0 | 2.8 | 0 | 0 | 0 | 0.98 | 0.97 |
Relative abundance (%)c | 0.50 | 0.47 | 0.75 | 0.46 | 0.06 | 0.07 | 0.05 | 0.08 | 0.47 | 0.29 | 0.08 | 0.07 | 0.19 | 0.07 |
