Table 1 Relative abundances of mGMB bacteria in ob/ob and C57BL/6J mice.
From: The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria
Taxon number | Taxonomy | RA of WT | RA of OB | Significance | Taxon number | Taxonomy | RA of WT | RA of OB | Significance | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
Akkermansiaceae | Lachnospiraceae | ||||||||||
Taxon 151 | Akkermansia muciniphila | 7.05E–03 | 2.34E–04 | *** | WT | Taxon 43 | Obsemuribacterium intestinalis | 7.75E–04 | 3.33E–03 | *** | OB |
Aerococcaceae | ns | Taxon 61 | Caecifactor intestinalis | 1.36E–03 | 4.06E–03 | ns | |||||
Taxon 4 | Aerococcus urinaeequi | 0.00E+00 | 1.40E–04 | ns | Taxon 62 | Paramurimonas intestinalis | 1.00E–03 | 1.50E–03 | ns | ||
Bacillaceae | Taxon 73 | Lacticimuribacterium intestinale | 8.53E–03 | 1.06E–02 | ns | ||||||
Taxon 8 | Bacillus foraminis | 2.29E–06 | 1.15E–05 | Taxon 74 | Obesitatistipes intestinalis | 1.17E–03 | 2.40E–03 | ns | |||
Taxon 111 | Bacillus aerius | 9.18E–06 | 9.18E–06 | ns | Taxon 78 | Caeciabundans intestinalis | 5.57E–04 | 5.30E–04 | ns | ||
Bacteroidaceae | Taxon 81 | Musculimicrobium intestinale | 2.56E-03 | 6.26E–04 | *** | WT | |||||
Taxon 33 | Bacteroides rodentium | 1.91E–02 | 1.25E–02 | ns | Taxon 82 | Murispira intestinalis | 2.52E–05 | 2.02E–04 | ns | ||
Taxon 53 | Bacteroides acidifaciens | 3.92E–02 | 2.58E–02 | ns | Taxon 83 | Faecimonas intestinalis | 8.49E–05 | 9.41E–05 | ns | ||
Taxon 54 | Bacteroides caecimuris | 3.38E–03 | 3.55E–03 | ns | Taxon 85 | Parablautia intestinalis | 1.08E–04 | 9.41E–05 | ns | ||
Taxon 141 | Bacteroides uniformis | 1.74E–04 | 7.57E–05 | *** | WT | Taxon 86 | Parablautia muris | 1.08E–04 | 1.61E–04 | ns | |
Taxon 152 | Bacteroides vulgatus | 1.02E–03 | 3.88E–04 | * | WT | Taxon 87 | Intestipraevalens muris | 6.31E–03 | 4.60E–03 | ns | |
Taxon 153 | Bacteroides sartorii | 1.67E–02 | 1.29E–02 | ns | Taxon 88 | Murispiricella intestinalis | 1.22E–03 | 9.08E–04 | ns | ||
Bifidobacteriaceae | Taxon 89 | Muspiracella faecis | 1.82E–03 | 1.36E–03 | ns | ||||||
Taxon 17 | Bifidobacterium pseudolongum | 7.69E–04 | 2.89E–04 | ns | Taxon 90 | Musculibacter intestinalis | 2.66E–04 | 9.34E–04 | ns | ||
Taxon 71 | Bifidobacterium longum | 7.11E–05 | 3.21E–05 | * | WT | Taxon 93 | Faecibacter intestinalis | 1.09E–03 | 1.85E–03 | ns | |
Clostridiaceae | Taxon 94 | Muribacillus muris | 5.74E–05 | 1.72E–04 | ** | OB | |||||
Taxon 10 | Clostridium cocleatum | 7.96E–04 | 6.42E–04 | * | OB | Taxon 99 | Roseburia muris | 3.52E–03 | 1.16E–02 | * | OB |
Taxon 42 | Butyricicoccus muris | 6.77E–04 | 1.51E–03 | ns | Taxon 101 | Paramurimonas faecis | 1.00E–03 | 2.66E–03 | ns | ||
Taxon 45 | Cognaticlostridium intestinale | 8.81E–04 | 4.28E–03 | ** | OB | Taxon 114 | Lactobacillus caviae | 2.64E–03 | 6.09E–03 | * | OB |
Taxon 47 | Propinquiclosttridium intestinale | 4.82E–04 | 2.04E–03 | ** | OB | Taxon 116 | Lactobacillus vaginalis | 2.64E–03 | 6.09E–03 | * | OB |
Taxon 50 | Clostridium faecis | 9.81E–03 | 6.86E–03 | ns | Taxon 117 | Lactobacillus reuteri | 2.64E–03 | 6.09E–03 | * | OB | |
Taxon 92 | Propinquiclostridium muris | 7.02E–04 | 3.53E–03 | ** | OB | Taxon 118 | Muribacterium intestinale | 1.40E–02 | 1.69E–02 | ns | |
Taxon 96 | Propinquiclostridium caecimuris | 4.57E–04 | 2.95E–03 | * | OB | Taxon 119 | Lactobacillus intestinalis | 1.87E–02 | 2.11E–02 | ns | |
Taxon 103 | Faeciclostridum intestinalis | 1.86E–03 | 3.93E–03 | ns | Taxon 120 | Caecibaculum intestinale | 3.18E–03 | 4.70E–03 | ns | ||
Taxon 115 | Facilibacter intestinalis | 1.45E–02 | 7.07E–03 | ns | Taxon 131 | Columultus intestinalis | 5.05E–05 | 4.07E–03 | ns | ||
Clostridiales IncertaeSedisXIII | Muribaculaceae | ||||||||||
Taxon 13 | “Ihubacter muris” | 1.62E–03 | 2.23E–03 | ns | Taxon 29 | Duncaniella intestinalis | 2.00E–02 | 1.63E–02 | ** | WT | |
Taxon 40 | Murimicrobium intestinale | 2.98E–05 | 9.64E–05 | ns | Taxon 52 | Caecibacillus intestinalis | 6.88E–04 | 4.57E–04 | ns | ||
Taxon 104 | Murirhabdus intestinalis | 9.06E–04 | 9.61E–04 | ns | Taxon 64 | Duncaniella muris | 6.62E–03 | 5.07E–03 | ns | ||
Taxon 105 | Digestivibacterium intestinale | 1.62E–03 | 2.23E–03 | ns | Taxon 72 | Obesimuribacter intestinalis | 5.05E–02 | 2.95E–02 | ** | WT | |
unclassified Clostridiales | Odoribacteraceae | ||||||||||
Taxon 41 | Intestinifractor faecalis | 1.18E–02 | 9.03E–03 | ns | Taxon 68 | “Culturomica muri” | 4.36E–05 | 8.05E–04 | ns | ||
Taxon 60 | Intestinifractor caecimuris | 1.18E–02 | 9.01E–03 | ns | Oscillospiraceae | ||||||
Taxon 76 | Pseudoflavonifractor muris | 3.05E–03 | 1.01E–02 | * | OB | Taxon 123 | Rigidibacter intestinalis | 3.26E–03 | 3.83E–03 | ns | |
Taxon 130 | Intestinifractor faecis | 1.18E–02 | 1.00E–02 | ns | Taxon 125 | Vitreibacter intestinalis | 3.20E–03 | 2.48E–03 | ns | ||
Taxon 132 | Intestinifractor muris | 4.42E–03 | 2.44E–03 | ** | WT | Taxon 126 | Vitreibacter faecis | 7.10E–03 | 7.51E–03 | ns | |
Taxon 133 | Intestinifractor intestinalis | 1.18E–02 | 1.00E–02 | ns | Taxon 127 | Vitreibacter muris | 8.42E–04 | 1.03E–03 | ns | ||
Coriobacteriaceae | Taxon 129 | Vitreibacter caecimuris | 2.82E–03 | 4.12E–03 | ns | ||||||
Taxon 51 | Parvibacter caecicola | 6.88E–05 | 1.70E–04 | ns | Peptostreptococcaceae | ||||||
Eggerthellaceae | Taxon 55 | Romboutsia muris | 2.28E–03 | 2.45E-03 | ns | ||||||
Taxon 19 | Stereobacter intestinalis | 4.86E–04 | 7.11E–05 | ** | WT | Taxon 106 | Peptoclostridium difficile | 6.88E–06 | 1.61E-05 | ns | |
Taxon 22 | Adlercreutzia mucosicola | 3.23E–04 | 4.96E–04 | ns | Propionibacteriaceae | ||||||
Taxon 23 | Mucirhabdus intestinalis | 3.23E–04 | 3.62E–04 | ns | Taxon 145 | Cutibacterium acnes | 9.18E–06 | 1.93E–04 | ns | ||
Taxon 25 | Stereobacterium intestinale | 6.88E–06 | 1.86E–04 | ns | Rikenellaceae | ||||||
Taxon 142 | Adlercreutzia muris | 2.84E–04 | 2.71E–04 | ns | Taxon 67 | Alistipes muris | 3.04E–03 | 1.39E–03 | *** | WT | |
Taxon 143 | Adlercreutzia caecimuris | 2.84E–04 | 4.22E–04 | ns | Ruminococcaceae | ||||||
Taxon 144 | Adlercreutzia faecis | 2.84E–04 | 4.22E–04 | ns | Taxon 11 | Mucibacterium intestinale | 5.02E–04 | 1.50E–03 | ** | OB | |
Enterococcaceae | Taxon 12 | Anaerotruncus muris | 2.07E–03 | 4.15E–03 | ns | ||||||
Taxon 5 | Enterococcus gallinarum | 3.44E–05 | 2.00E–04 | ns | Taxon 37 | Acutalibacter faecis | 1.17E–03 | 3.23E–03 | *** | OB | |
Taxon 6 | Enterococcus faecalis | 3.44E–05 | 4.36E–05 | ns | Taxon 38 | Lipomuribacter intestinalis | 4.29E–04 | 1.07E–03 | ** | OB | |
Taxon 108 | Enterococcus asini | 3.44E–05 | 3.90E–05 | ns | Taxon 39 | Lipomuribacter faecis | 4.29E–04 | 9.27E–04 | ** | OB | |
Taxon 109 | Enterococcus xiangfangensis | 3.44E–05 | 3.90E–05 | ns | Taxon 56 | Anaerotruncus colihominis | 5.05E–05 | 5.05E–05 | ns | ||
Erysipelotrichaceae | Taxon 75 | Acetivibrioides intestinalis | 5.04E–03 | 9.86E–03 | ns | ||||||
Taxon 59 | Dubosiella newyorkensis | 9.68E–04 | 2.06E–05 | ** | WT | Taxon 95 | Ruminococcus muris | 9.81E–03 | 6.92E–03 | ns | |
Taxon 66 | Turicibacter muris | 2.37E–03 | 1.72E–04 | *** | WT | Taxon 121 | Acetivibrioides faecis | 2.17E–03 | 2.38E–03 | ns | |
Taxon 122 | Obesitatibacterium intestinale | 4.29E–04 | 1.03E–03 | * | OB | Taxon 139 | Acutalibacter intestinalis | 1.17E–03 | 3.04E–03 | *** | OB |
Eubacteriaceae | Taxon 140 | “Negativibacillus muris” | 1.99E–03 | 5.30E–04 | *** | WT | |||||
Taxon 97 | Eubacterium contortum | 9.66E–04 | 2.55E–04 | ns | Staphylococcaceae | ||||||
Taxon 98 | Eubacterium muris | 2.12E–03 | 2.66E–04 | *** | WT | Taxon 110 | Staphylococcus warneri | 3.44E–05 | 2.06E–05 | ns | |
Lactobacillaceae | Tannerellaceae | ||||||||||
Taxon 1 | Lactobacillus murinus | 3.47E–03 | 1.22E–02 | *** | OB | Taxon 34 | Parabacteroides distasonis | 5.01E–03 | 1.44E–03 | ** | WT |
Taxon 14 | Faeciroseburia intestinalis | 9.41E–05 | 4.43E–04 | ** | OB | Taxon 77 | Parabacteroides goldsteinii | 7.46E–04 | 7.80E–04 | ns | |
Taxon 15 | Antifaeciroseburia intestinalis | 3.49E–04 | 2.20E–03 | ** | OB | Taxon 149 | Parabacteroides muris | 5.01E–03 | 2.13E–03 | * | WT |
Taxon 2 | Lactobacillus taiwanensis | 1.73E–02 | 2.23E–02 | ns | Taxon 154 | Parabacteroides intestinalis | 5.01E–03 | 1.37E–03 | ** | WT | |
Taxon 3 | Lactobacillus johnsonii | 1.74E–02 | 3.64E–02 | * | OB | Streptococcaceae | |||||
Taxon 107 | Streptococcus acidominimus | 0.00E+00 | 1.84E–05 | ns |
