Table 3
From: Modeling medulloblastoma in vivo and with human cerebellar organoids
Target Gene | Forward primer | Reverse primer |
|---|---|---|
CCND1 | ATGTTCGTGGCCTCTAAGATGA | CAGGTTCCACTTGAGCTTGTTC |
CDK4 | CTTTGGCAGCTGGTCACATGG | CTCAGATCAAGGGAGACCCTCAC |
P21 | CTGGAGACTCTCAGGGTCGAA | GATTAGGGCTTCCTCTTGGAGAA |
CDKN2B (p15) | CCCTCGACACTCACCATGAA | CGACCCCTGGAATGTCACAC |
GAPDH | CCACTCCTCCACCTTTGAC | ACCCTGTTGCTGTAGCCA |
CCNB1 | ATGTGCCCCTGCAGAAGAAG | TTTCCAGTGACTTCCCGACC |
GAS1 | GGACGAGAACTGCAAGTCCA | AGACTTTGCCGCAGTAGGTC |
hsa-miR9-2 | CTAACGCTGCCGGAGATTAC | TACTTGCCGCGCTTAAGATT |
hsa-miR9-3 | GCGCTCGAGGCTCTCTAAG | GAGGGGATGGACAGACACAC |
CDH2 (N-cadherin) | CGACGAATGGATGAAAGACCC | GCCACTGCCTTCATAGTCAAAC |
SNAI1 | CTAGGCCCTGGCTGCTACAA | CCTGGCACTGGTACTTCTTGA |
TWIST1 | CTTCTCGGTCTGGAGGATGG | GAAACAATGACATCTAGGTCTCCG |
PRUNE1 | CACTGAGCAGATGCTGAGAAAAG | TGCACTAATGGCCACCTTGAC |
PIN1 | GAGAAGATCACCCGGACCAA | AAAGTCCTCCTCTCCCGACT |
NRL | CATTGGGGCTGAGTCCTGAA | CGCACAGACATCGAGACCA |
CRX | CCCACTATTCTGTCAACGCCT | GACGTCTGGGTACTGGGTCT |
CCND2 | GCGGAGAAGCTGTGCATTTA | CATGCTTGCGGATCAGAGAC |
BCL2L1 (BCL-XL) | CTGTGCGTGGAAAGCGTAGA | GCTGCTGCATTGTTCCCATAG |
NCAM | GAGATCAGCGTTGGAGAGTCC | GGAGAACCAGGAGATGTCTTTATCTT |
PTPRZ1 (DSD-1-PG) | TGCAGAGCTGTACTGTTGACTT | CTGTGCTAGCTTAACCCTGCT |
EFNA2 (Ephrin A2) | CTACATCTCTGCCACGCCTC | CGGGCTGCTACACGAGTTAT |
TNC (Tenascin-C) | TCTGGTGCTGAACGAACTGC | CCAGGAAACTGTGAACCCGTA |
XBP1 | TGCCAGAGATCGAAAGAAGGC | CCAAGCGCTGTCTTAACTCCT |
KIT | CCTGAACACCAGCAGTGGAT | TGTAAGTGCCTCCTTCGGTG |
TYRO3 | GCCACTGGTGGTCTCTTCTC | CGTTAGCACACCAAGGACCA |
CDKN2A (p16) | CTTCGGCTGACTGGCTGG | CGTGTCCAGGAAGCCCTC |
CRABP1 | ACTTCAAGGTCGGAGAAGGC | AGTTTGCGTGCAGTGGATCT |
BMI-1 | CGCTTGGCTCGCATTCATTT | CACACACATCAGGTGGGGAT |
DLGAP5 (HURP) | TGTTTGGTTGAGGTTTCACGC | CCTGTGTCGACTGGCAAAATG |
AURKA | CAGTACATGCTCCATCTTCCAG | AAAGAACTCCAAGGCTCCAG |
cMyc | GCGACTCTGAGGAGGAACAA | CCTCCAGCAGAAGGTGATCC |
OTX2 | GAGGTGGCACTGAAAATCAAC | TCTTCTTTTTGGCAGGTCTCA |
SMARCA4 | TGCTCCGACGACTCAAGAAG | TTCATCAGGGTCTTGGTGCC |
SMARCA4-FLAG | GAAGGAGAAGGCACAGGACC | TCATCGTCGTCCTTGTAGTCG |
SMARCA4-Venus | GAAGGAGAAGGCACAGGACC | CACCACCCCGGTGAACAG |
