Table 3 Conditional analysis for Indel I and SNP3 in a near-isogenic F2 population.
From: Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice
Analysis | Comparison of Indel I-3bp+ with Indel I-3bp- conditioning on SNP3-T | Comparison of SNP3-T with SNP3-C conditioning on Indel I-3bp+ |
|---|---|---|
P-value (40 DAG) | 0.3724 | 1.19E-01 |
Mean value difference | 7.59% | 12.90% |
Variance | 19.5 | 13.1 |
Effect size | 0.47 | 0.82 |
P-value (50 DAG) | 0.02 | 6.15E-05 |
Mean value difference | 15.40% | 22.80% |
Variance | 70.9 | 45.1 |
Effect size | 1.64 | 2.77 |
Tiller number comparison | Indel I-3bp+ >a Indel I-3bp− | SNP3-C <b SNP3-T |
