Table 1 Summary statistics of the genetic maps of each family and the consensus genetic map.

From: Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

 

HC

MN

RS

BC

Consensus Map

Number of vines

157

1007

504

260

600

Cross type

F1

F1

F2

F1

rhAmpSeq core genome markers

2000

2000

2000

2000

2000

Markers in linkage groups

1153

1387

1113

1222

1661

Markers that failed to return data

55

14

30

25

31

Monomorphic markersa

562(34)

422(48)

697(111)

614(42)

111

Distorted markersa

230(47)

187(93)

160(11)

139(50)

228

Male genetic map size (cM)

2224.2

1760.8

1415.8

1787.7

Female genetic map size (cM)

1333.4

1519.0

1569.5

1502.9

Sex-averaged genetic map size (cM)

1198.1

Male genome-wide recombination rate (cM/Mbp)

4.9

3.8

3.1

3.9

Female genome-wide recombination rate (cM/Mbp)

2.9

3.3

3.4

3.3

Sex-averaged genome-wide recombination rate (cM/Mbp)

2.61

Male genome-wide correlation of the genetic and physical map (r)

0.79

0.93

0.79

0.86

Female genome-wide correlation of the genetic and physical map (r)

0.86

0.90

0.80

0.86

Sex-averaged genome-wide correlation of the genetic and physical map (r)

0.95

Genomeb coverage (%)

95.9%

98.2%

96.9%

96.4%

98.6%

  1. Abbreviation: HC, Horizon × V. cinerea B9; MN, MN 1264 × MN 1246; RS, V. riparia 37 × Seyval; BC B37-28 × C56-11
  2. aThe number in the parentheses indicates the number of markers with a null allele segregating according to Mendelian expectations
  3. b Relative to 12X.v2 version of the PN40024 reference genome