Table 1 Summary statistics of the genetic maps of each family and the consensus genetic map.
HC | MN | RS | BC | Consensus Map | |
|---|---|---|---|---|---|
Number of vines | 157 | 1007 | 504 | 260 | 600 |
Cross type | F1 | F1 | F2 | F1 | – |
rhAmpSeq core genome markers | 2000 | 2000 | 2000 | 2000 | 2000 |
Markers in linkage groups | 1153 | 1387 | 1113 | 1222 | 1661 |
Markers that failed to return data | 55 | 14 | 30 | 25 | 31 |
Monomorphic markersa | 562(34) | 422(48) | 697(111) | 614(42) | 111 |
Distorted markersa | 230(47) | 187(93) | 160(11) | 139(50) | 228 |
Male genetic map size (cM) | 2224.2 | 1760.8 | 1415.8 | 1787.7 | – |
Female genetic map size (cM) | 1333.4 | 1519.0 | 1569.5 | 1502.9 | – |
Sex-averaged genetic map size (cM) | – | – | – | – | 1198.1 |
Male genome-wide recombination rate (cM/Mbp) | 4.9 | 3.8 | 3.1 | 3.9 | – |
Female genome-wide recombination rate (cM/Mbp) | 2.9 | 3.3 | 3.4 | 3.3 | – |
Sex-averaged genome-wide recombination rate (cM/Mbp) | – | – | – | – | 2.61 |
Male genome-wide correlation of the genetic and physical map (r) | 0.79 | 0.93 | 0.79 | 0.86 | – |
Female genome-wide correlation of the genetic and physical map (r) | 0.86 | 0.90 | 0.80 | 0.86 | – |
Sex-averaged genome-wide correlation of the genetic and physical map (r) | – | – | – | – | 0.95 |
Genomeb coverage (%) | 95.9% | 98.2% | 96.9% | 96.4% | 98.6% |