Fig. 4: Novel transcripts related to brain regions and individuals.

a Boxplot showing the percentage of RNA-seq reads mapped to different genomic regions on the rhesus macaque genome. In boxplots, center line, box edges, whiskers, and points indicate the median, upper, and lower quartiles (the 25th and 75th percentiles), 1.5 × interquartile range and outlier, respectively. b Venn plot showing the accuracy of CPAT and CPC2 predicted coding potential comparing with the reference transcripts. c Venn plot showing the number of coding transcripts with coding potential predicted by CPAT and CPC2. d Circos plot shows the distribution of assembly transcripts. The pie chart shows 12.51% transcripts were complete match with reference transcripts. The donut chart shows the composition of the assembled transcripts relative to reference transcripts. The three circles of area charts indicate density of novel intergenic (orange), exonic_overlap (red), and intragenic (blue) transcripts on the genome, respectively. e Genome browser view showing lobe-related expression of novel transcript TU12213. f Genome browser view showing subregion-related expression of novel transcript TU31016 that is homologous with human protein GPR139. g Genome browser view showing subregion-specific expression of novel transcript TU44651, located on chromosome 7.