Table 4 Distribution of GTEx eQTLs by tissue type in contaminating genes.
From: Consistent RNA sequencing contamination in GTEx and other data sets
Genes | Appropriate tissues | Possible tissues | Inappropriate tissues |
|---|---|---|---|
PRSS1 | — | Small intestine | Liver, coronary, skin, lung |
PNLIP | — | — | — |
CPA1 | — | — | Coronary |
GP2 | — | — | Brain |
CELA3A | Pancreas | Stomach | Liver |
KRT13 | Vagina | Lung | — |
PGC | — | Lung, pancreas | Tibial artery |
KRT4 | Esophagus | Skin, lung | Colon, brain, thyroid |
PRL | — | — | Gastroesophageal junction, skin, tibial artery |
LIPF | Stomach | — | — |
CLPS | Pancreas | — | — |
CTRB2 | Pancreas | — | Aorta, brain, lung, thyroid |
FGA | Liver | Stomach | — |
HP | — | Whole blood, adipose (2), artery (3), lung, tibial nerve, heart | Brain, esophagus mucosa |
CKM | — | — | Aorta, whole blood |
MYBPC1 | — | Heart, testis, colon, prostate, brain (2) | Esophagus (2), lung, thyroid |
MYH2 | — | — | Colon, lung |
ZG16B | — | Skin (2), adrenal, fibroblasts, lung, stomach, prostate, spleen, colon, testis, whole blood | Adipose, esophagus, pituitary |
