Table 2 Polymorphism statistics.

From: Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

Breeda

Reference

SNP

INDEL

BND

DEL

DUP

INV

Angus

Angus

10,615,122

1,381,548

38

84

22

3

Brahman

Angus

24,930,357

2,928,526

311

641

86

22

Angus

Brahman

16,504,067

2,090,735

159

182

40

11

Brahman

Brahman

23,876,357

2,804,421

279

481

97

18

  1. BND complex structural variant, DEL deletion, DUP duplication, INV inversion.
  2. aBreed here refers to the ~10× WGS short reads used to align to the reference. BND, DEL, DUP, and INV are structural variant types called in Lumpy.
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