Table 1 Organisms from the retrospective sequencing survey described in this study.

From: Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines

Organism (code)

Key resistance(s)

Antibiotics tested by ARSP

Genomes

Sentinel sites

K. pneumoniae (Kpn)

Carbapenems, ESBL-producing

AMP, FOX, CAZ, CRO, FEP, IPM, AMC, TZP, GEN, AMK, CIP, SXT

340

18

E. coli (Eco)

Carbapenems, ESBL-producing

AMP, FOX, CAZ, CRO, FEP, IPM, AMC, TZP, GEN, AMK, CIP, SXT

181

17

P. aeruginosa (Pae)

Carbapenems

CAZ, FEP, IPM, MEM, TZP, GEN, TOB, AMK, CIP

176

17

A. baumannii (Aba)

Carbapenems

CAZ, CRO, IPM, SAM, TZP, GEN, AMK, CIP, SXT

108

13

  1. Key resistances were used to select the isolates for WGS. The number of draft genomes obtained and the number of ARSP sentinel sites they represent are indicated. Antibiotics tested by ARSRL for each organism are abbreviated according to their WHONET codes: AMC amoxicillin/clavulanic acid, AMK amikacin, AMP ampicillin, CAZ ceftazidime, CIP ciprofloxacin, CRO ceftriaxone, GEN gentamicin, FEP cefepime, FOX cefoxitin, IPM imipenem, MEM meropenem, SAM ampicillin/sulbactam, SXT trimethoprim/sulfamethoxazole, TOB tobramycin, TZP piperacillin/tazobactam.
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