Table 1 GTEx normal brain regions and TCGA tumor types.
Number of samples | |
|---|---|
GTEx region | |
Normal brain | 1216 |
Pooled normal brain (spinal cord and cerebellum removed) | 926 |
Amygdala | 72 |
Anterior cingulate cortex (BA24) | 82 |
Caudate (basal ganglia) | 113 |
Cerebellar hemisphere | 101 |
Cerebellum | 121 |
Cortex | 109 |
Frontal cortex (BA9) | 104 |
Hippocampus | 92 |
Hypothalamus | 90 |
Nucleus accumbens (basal ganglia) | 109 |
Putamen (basal ganglia) | 93 |
Spinal cord (cervical c-1) | 68 |
Substantia nigra | 62 |
TCGA tumor type | |
Low grade glioma | 532 |
Low grade glioma (CIMP) | 437 |
Low grade glioma (nonCIMP) | 95 |
GBM | 170 |
GBM (CIMP) | 5 |
GBM (nonCIMP) | 59 |
GBM CIMP status not-available | 106 |
