Table 1 Comparison of cnidarian genome assembly quality.
From: Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing
Common name | Coral | Sea anemone | Sea anemone | Hydroid | Hydroid | Box jellyfish | Moon jellyfish | Moon jellyfish | Amuska jellyfish | Edible jellyfish |
|---|---|---|---|---|---|---|---|---|---|---|
Species name | Acropora digitifera | Exaiptasia pallida | Nematostella vectensis | Hydra vulgaris | Clytia hemisphaerica | Morbakka virulenta | Aurelia (California) | Aurelia (Baltic sea) | Sanderia malayensis | Rhopilema esculentum |
Assembly version | GCA_000222465.2 | GCA_001417965.1 | GCA_000209225.1 | GCA_000004095.1 | / | RDPX00000000 | / | REGM00000000 | RQOL00000000 | SWAQ00000000 |
Number of scaffolds | 2421 | 4312 | 10,804 | 20,916 | 7644 | 4538 | 25,454 | 2710 | 970 | 1681 |
Assembly size | 447,497,157 | 256,132,296 | 356,613,585 | 852,170,992 | 445,209,699 | 951,575,644 | 757,170,055 | 376,952,359 | 184,371,355 | 256,689,583 |
Gap content (N) | 15.24% | 17.69% | 16.61% | 7.82% | 16.63% | 11.87% | 12.84% | 6.63% | 0.03% | 0.10% |
Contig N50 | 10,915 | 14,401 | 19,835 | 10,112 | 3,800 | 30,845 | 20,000 | 33,962 | 576,835 | 207,270 |
Scaffold N50 | 483,559 | 442,145 | 472,558 | 96,317 | 366,311 | 2,173,999 | 121,658 | 1,042,981 | 4,676,287 | 12,930,448 |
Complete BUSCOs | 74.6% | 88.7% | 89.1% | 81.5% | 86.0% | 81.5% | 86.0% | 79.8% | 90.6% | 87.1% |
References | Shinzato et al. 23 | Baumgarten et al.22 | Putnam et al.21 | Chapman et al.24 | Leclère et al.25 | Khalturin et al.28 | Gold et al.27 | Khalturin et al.28 | This study | This study |
