Table 2 Characterization of LR insertions and deletions using RepeatMasker.
From: Discovery and population genomics of structural variation in a songbird genus
Classification | Number | Percentage |
|---|---|---|
Tandem repeat total | 8847 | 21.48 |
Simple repeat | 7167 | 17.4 |
Low complexity repeat | 1595 | 3.87 |
Satellite | 75 | 0.18 |
rRNA | 5 | <0.05 |
tRNA | 3 | <0.05 |
Macrosatellite | 1 | <0.05 |
Interspersed repeat total | 10,828 | 26.3 |
LTR retrotransposon | 9692 | 23.53 |
LINE/CR1 retrotransposon | 1123 | 2.27 |
SINE retrotransposon | 11 | <0.05 |
DNA/hAT-Charlie element | 2 | <0.05 |
No match | 21,492 | 52.19 |
