Fig. 1: The tomato mobilome.
From: The impact of transposable elements on tomato diversity
a Phylogeny of the 602 tomato accessions analyzed, including wild tomato relatives (Wild), wild tomatoes (S. pimpinellifolium, SP), early domesticated tomatoes (S. lycopersicum cerasiforme, SLC), and cultivated tomatoes (S. lycopersicum lycopersicum vintage and modern, SLL). b Schematic representation of the SPLITREADER bioinformatics pipeline used to identify TE insertion polymorphisms (TIPs) using split- and discordant reads. c Distribution frequency of allele counts for TIPs. d Principal component analysis based on TIPs. Colors represent tomato groups as indicated in (a). e Cumulative plot of the number of mobile TE families detected with increasing numbers of accessions. Shaded bands represent ±95% CI. f Number of detected TIPs per TE family. g Number of mobile TE families detected in each tomato group. Data are mean ±95% CI obtained by 100 bootstraps, and statistical significance for differences were obtained by a randomization test. Source data of Fig. 1a, f are provided as a Source Data file.
