Fig. 6: Machine-learning models of TF recognition sequence and co-binding.
From: Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors
a TFs clustered by sequence binding similarity (predicted k-mer weights) derived from the sequence models. b Example browser tracks showing the promoter region of Lhca, which encodes the light-harvesting complex of photosystem I. Occlusion analysis for TFs targeting Lhca promoter showing scores of putative regulatory positions at base pair resolution derived from the models. c Conservation of recognition sequence between Arabidopsis and maize TF homologs. Numbers of TFs examined are shown at the top, and the TF family names are shown at the bottom. d Cluster of 104 TFs based on their relative importance value with co-binding TFs. e Top three co-binding partner TFs of LHY1 based on RI ranking. Source data underlying Fig. 6c, d are provided as a Source Data file.
