Fig. 4: Model I: only the fully open state is conducting, and subunits move independently during desensitization. | Nature Communications

Fig. 4: Model I: only the fully open state is conducting, and subunits move independently during desensitization.

From: The desensitization pathway of GABAA receptors, one subunit at a time

Fig. 4

a We assume in this model that a single desensitized subunit is enough to shut the pore of the channel, leading to functional desensitization. Moreover, subunits SU3, SU4, and SU5 can undergo a desensitization rearrangement independent of the other subunits. Thus, desensitization rates (δ3+ for SU3, δ+ for SU4 and SU5) and recovery rates (δ3 for SU3, δ for SU4 and SU5) do not depend on the conformation of the neighboring subunits. b Effect of M3-5′ valine mutations in Model I. Mutations are hypothesized to specifically increase the desensitization rates of the mutated subunits, without altering any other parameter. ce Representative currents for CWT (panel c), C4 (panel d) and C45 (panel e), in black, are compared to the outcome of two distinct simulations. In simulation a (red), the mutation-induced increase in the desensitization rates of SU4 and SU5 is adjusted so that the simulation of single mutants C4 and C5 broadly fits the experimental data, as seen in panel (d). In simulation b (blue), the mutation-induced increase in the desensitization rates of SU4 and SU5 is adjusted so that the simulation of the double mutant C45 accounts for the experimental data, as seen in panel (e). f Bar graph summarizing the experimental data vs the predicted effects of SU4 and/or SU5 mutations on the kinetics of the fast desensitization component in simulations a and b. Experimental data are shown as means (bar graphs) and standard deviations (error bars), with individual data points indicated as circles. For panels cf note that parameters from simulation a fail at describing the data for the double mutant C45, while parameters from simulation b largely overestimate the effect of single mutants. See Supplementary Table 1 for numerical experimental values, the number of cells and number of independent series of experiments; and Supplementary Table 3 for the numerical values of parameters.

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