Fig. 2: Characterizing consensus-level variants and sequence divergence among Dane and Milwaukee county sequences. | Nature Communications

Fig. 2: Characterizing consensus-level variants and sequence divergence among Dane and Milwaukee county sequences.

From: Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread

Fig. 2: Characterizing consensus-level variants and sequence divergence among Dane and Milwaukee county sequences.The alternative text for this image may have been generated using AI.

Single-nucleotide variants (SNVs) are annotated relative to the initial Wuhan SARS-CoV-2 reference (Genbank: MN908947.3). a Frequency of consensus SNVs among the Dane county sequences (red). b Frequency of consensus SNVs among the Milwaukee county sequences (blue). Open symbols denote synonymous or intergenic SNVs and closed symbols denote nonsynonymous SNVs. c A divergence-based phylogenetic tree built using Nextstrain tools for the 122 Dane county (red) and 125 Milwaukee county (blue) sequences. Wisconsin samples are rooted against Wuhan-Hu-1/2019 and Wuhan/WH01/2019. Source data to replicate this figure can be found in the Source Data file.

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