Table 1 Annotation of the 14 most significant features used in discriminating stimulated vs. unstimulated MSCs.

From: Sub-nanoliter metabolomics via mass spectrometry to characterize volume-limited samples

#

m/z

Fold change

p-Value

Identity

Formula

Adduct typea

Theoretical m/z

Error (p.p.m.)

Chemical annotation method

1

123.0552

3.2E + 00

4.4E − 03

Niacinamide

C6H6N2O

[M + H]+

123.0553

0

MS/MS matched with database

2

137.0465

1.5E − 01

2.1E − 02

Hypoxanthine

C5H4N4O

[M + H]+

137.0458

4

MS/MS matched with database

3

146.0598

2.2E + 01

1.8E − 05

3-Methyldioxyindole

C9H9NO2

[M + H-H2O]+

146.0600

1

IM-MS/MS main fragments matched with in silico fragments.b

4

163.9777

2.4E + 00

5.4E − 03

Taurine

C2H7NO3S

[M + K]+

163.9778

1

Potassium adduct of taurine chemical standard could not be fragmented; accurate mass matched with standard

5

170.0321

2.3E + 00

2.0E − 02

Creatine

C4H9N3O2

[M + K]+

170.0326

3

MS/MS matched with database

6

209.0927

1.6E + 01

7.6E − 04

l-Kynurenine

C10H12N2O3

[M + H]+

209.0921

3

MS/MS matched with chemical standard MS/MS

7

220.1077

3.9E + 02

2.5E − 15

5-Hydroxy-l-tryptophan

C11H12N2O3

[M + NH4-H2O]+

220.1080

1

MS/MS manually matched

8

227.0793

6.6E − 03

4.6E − 14

l-Tryptophan

C11H12N2O2

[M + Na]+

227.0791

1

MS/MS matched with chemical standard MS/MS

9

232.0762

2.6E + 01

1.0E − 05

Cysteinyl-Glutamine

C8H15N3O4S

[M + H-H2O]+

232.0756

2

N/A

10

243.0745

2.1E + 02

2.9E − 10

5-Hydroxy-l-tryptophan

C11H12N2O3

[M + Na]+

243.0740

2

MS/MS matched with chemical standard MS/MS

11

247.0476

2.6E + 02

1.5E − 09

l-Kynurenine

C10H12N2O3

[M + K]+

247.0479

1

MS/MS partially matched with L-Kynurenine standard MS/MS

12

265.1559

2.2E + 00

1.8E − 02

5-Tetradecenoic acid (or other isomers)

C14H26O2

[M + K]+

265.1564

2

N/A

13

377.3017

4.2E + 00

2.1E − 02

2/3-hydroxydodecanoyl carnitine

C19H37NO5

[M + NH4]+

377.3010

2

N/A

14

785.5781

1.8E − 01

3.7E − 03

PC (35:4)

C43H78NO8P

[M + NH4]+

785.5803

2

MS/MS matched with database

  1. FC values were calculated as the stimulated/unstimulated IS-normalized abundance ratio. The two-tailed Student’s t-test was used to calculate p-values. These were calculated on the final dataset obtained after G-log transformation and autoscaling through MetaboAnalyst. Source data are provided as Source Data file.
  2. aIn positive-ion mode nanoESI, [M + H]+, [M + Na]+, and [M + K]+ are very common adduct types, as also shown in Fig. 2d–f and Supplementary Fig. 6. The [M + NH4]+ adducts detected here mainly arise due to the addition of NH4Ac during MSC processing, which significantly promotes [M + NH4]+ adduct formation (see also results in Supplementary Fig. 16).
  3. bFor feature #3, ion mobility (IM) MS/MS was used because precursor ion co-selection happened in DI MS/MS experiments.