Table 1 Hardware utilization for software tools supported by TranSPHIRE.

From: TranSPHIRE: automated and feedback-optimized on-the-fly processing for cryo-EM

Task

Program name

GPU

CPU

Reference

Motion correction

Unblur

 

X

20

MotionCor2

X

 

19

CTF estimation

CTER

 

X

22

GCTF

X

 

23

CTFFIND4

 

X

21

Particle picking

crYOLO

X

 

17,34

2D classification

GPU ISAC

X

 

Based on ISAC24

2D class selection

Cinderella

X

 

25

3D ab initio reconstruction

RVIPER

 

X

18

3D refinement

MERIDIEN

 

X

18

Utilities programs

SPHIRE

 

X

18

EMAN2

 

X

27

IMOD

 

X

35

  1. List of all currently supported software tools indicating if the given software runs on CPUs or GPUs within the TranSPHIRE pipeline. Tools are grouped corresponding to the pipeline task they are utilized for.
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