Fig. 3: Genomic landscape of selection signals for domestication in soybean.
From: The patterns of deleterious mutations during the domestication of soybean
Chromosomes based on the Williams 82 reference genome sequence v. Wm82.a2.v1 (a). Centromere repeat regions are indicated by gray bands. Nucleotide diversity (π) in 1 Mb windows for each soybean subpopulation (red=G. max, dark blue=G. soja, green=hybrid) (b). Tajima’s D for each soybean subpopulation (red=G. max, dark blue=G. soja, green=hybrid) (c). Distribution of genome-wide likelihood (XP-CLR) values for selection during domestication (d). Plot is based on XP-CLR scores of 100-kb block with 10-kb sliding windows. Domestication quantitative trait loci (QTL) and genes on chromosomes as detected in a large mapping population Williams 82 × PI 47975233 (QTL = blue bands and genes = dark blue bands) (e). Gene names are also shown.
