Table 2 X-ray data collection and crystallographic refinement statistics.

From: Unique structural solution from a VH3-30 antibody targeting the hemagglutinin stem of influenza A viruses

 

H3_3I14

H3_D93N

H6_D93N

H10_3I14

PDB ID

6WF0

6WEZ

6WEX

6WF1

Data collection

 Space group

P63

P63

R32

P321

 Cell dimensions

  a (Å)

130.32

130.84

117.81

127.02

  b (Å)

130.32

130.84

117.81

127.02

  c (Å)

188.55

189.34

438.26

158.37

  α, β, γ (°)

90, 90, 120

90, 90, 120

90, 90, 120

90, 90, 120

 Resolution (Å)

42.66–3.46 (3.58–3.45)

39.02–3.21 (3.32–3.21)

48.26–3.49 (3.60–3.49)

41.58–4.19 (4.34–4.19)

 Unique reflections

23,612 (2349)

29,818 (2918)

15,294 (1421)

9561 (775)

 Total reflections

130,821 (12,953)

140,225 (14,027)

144,741 (13,615)

32,231 (1783)

  Rmerge

0.196 (0.992)

0.141 (1.147)

0.168 (0.649)

0.110 (0.581)

  Rpim

0.090 (0.459)

0.072 (0.581)

0.058 (0.219)

0.063 (0.406)

  I/σI

8.9 (1.7)

10.2 (1.2)

9.9 (3.2)

8.8 (1.5)

  CC1/2

0.989 (0.390)

0.996 (0.596)

0.995 (0.86)

0.987 (0.646)

 Completeness (%)

99.1 (98.7)

98.8 (97.6)

99.3 (94.5)

84.5 (70.2)

 Redundancy

5.5 (5.5)

4.7 (4.8)

9.5 (9.6)

3.4 (2.3)

Refinement

 Resolution (Å)

42.66–3.46

39.02–3.21

48.26–3.49

41.58–4.19

 Unique reflections

23,516 (2353)

29,741 (2964)

15,291 (1421)

9564 (778)

 Rwork/Rfree

0.231/0.282

0.232/0.281

0.276/0.333

0.261/0.309

 No. atoms:

  Protein

6959

6959

7109

6959

  Ligand

211

206

14

14

 B-factors (Å2)

  Average

100

95

112

244

  Hemagglutinin

79

73

86

235

  Glycans

121

111

108

257

  Antibody

124

120

145

256

 R.m.s. deviations

  Bond lengths (Å)

0.003

0.003

0.002

0.002

  Bond angles (°)

0.66

0.68

0.63

0.49

 Ramachandran

  Favored (%)

92.16

94.92

92.31

94.51

  Allowed (%)

7.84

5.08

7.58

5.49

  Outliers (%)

0

0

0.11

0

  1. R.m.s. deviations root-mean-square deviations.
  2. *Values in parentheses are for highest-resolution shell.