Fig. 3: SnapATAC constructs cellular trajectories for the developing mouse brain.
From: Comprehensive analysis of single cell ATAC-seq data with SnapATAC
a Two-dimensional visualization of a dataset that contains 4259 single-cell chromatin profiles from the hippocampus and ventricular zone in embryonic mouse brain (E18) reveals two-branch differentiation trajectories from progenitor cells to Granule Cells (DG) and Pyramidal Neurons (CA3) (left). Data source is listed in Supplementary Table 1. The cellular trajectory is determined using Slingshot. b Gene accessibility score (Methods section) of canonical marker genes is projected onto the 2D embedding.
