Table 1 Guilt-by-association methods.
From: Improving gene function predictions using independent transcriptional components
DEPICT and GADO | GENETICA (ours) | |
|---|---|---|
Strategy | Guilt-by-association prediction of gene functions using gene sets | Guilt-by-association prediction of gene functions using gene sets |
Transcriptional components | Principal component analysis | Independent component analysis |
Barcode | Comparison of eigenvector scalars of member genes and nonmember genes using Welch T test | Average of all mixing matrix weights of member genes |
Distance metric | Pearson correlation | Distance correlation |
Permutation test | No, parametric p values used | Yes, permutation p values used |
Reference | This study |
