Fig. 2: Differentiation trajectories of epidermal cells. | Nature Communications

Fig. 2: Differentiation trajectories of epidermal cells.

From: Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

Fig. 2

a UMAP projections showing epidermal cell populations (clusters 1, 4, and 9). E0 to E9, sub-cell clusters. Lines indicate two potential differentiation trajectories toward trichoblasts (T) and atrichoblasts (A). b, c t-SNE map of epidermal cell populations. Cells colored by Palantir pseudotime (b) or differentiation potential (c). d t-SNE map showing the expression pattern of four marker genes. e Expression of marker genes along Palantir pseudotime. f–i Expression of marker genes (green) in rice radicles. Three developmental stages (stage I to III) are shown. Six repeats each consisting of individual plants were performed for each gene. Red, FM4-64. Longitudinal (top) and transverse (bottom) sections are shown.

Back to article page