Table 1 Average fraction of correct maps retrieved within the first and the second tier.

From: VESPER: global and local cryo-EM map alignment using local density vectors

 

Global

Partial

 

FT

ST

FT

ST

VESPER (DOT)

0.613

0.670

0.592

0.657

CC

0.479

0.551

0.456

0.515

Laplacian

0.564

0.623

0.510

0.567

gmfit

0.563

0.609

0.479

0.551

gmfit (−64)*

0.566

0.613

0.479

0.556

fitmap

0.124

0.164

0.101

0.123

EM-SURFER

0.350

0.398

0.285

0.339

  1. Global and partial map search results are shown. FT, the fraction of correct maps within the first tier (top|C|−1 maps, where |C| represents the number of maps in the same class as the query map); ST, the fraction in the second tier (top 2*(|C|−1) maps). VESPER (DOT) is the results of VESPER using the DOT score. For the Laplacian filter, cross correlation was computed after the filter was applied to maps. gmfit used the default parameter of the gmfit program. gmfit(−64) used a “-maxsize 64” option when converting an EM map to a Gaussian mixture model using the gmconvert program. This is the parameter used in the gmfit webserver. The number in bold shows the best performance for each metric.
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