Table 1 Statistics for the genome assemblies of Armeniaca species.
From: Population genomics of apricots unravels domestication history and adaptive events
P. armeniaca | P. sibirica | P. mandshurica | ||
|---|---|---|---|---|
Marouch #14 | cv. Stella | CH320-5 | CH264-4 | |
Final assembly length | 203.93 Mb | 212.06 Mb | 259.43 Mb | 223.66 Mb |
Number of scaffolds | 8 | 12a | 8 | 8 |
Scaffold N50 (L50) | 25.15 Mb (4) | 25.5 Mb (4) | 33.8 Mb (4) | 29.44 Mb (4) |
Scaffold N90 (L90) | 20.01 Mb (7) | 20.01 Mb (7) | 26.17 Mb (7) | 22.24 Mb (7) |
Maximum length of scaffold | 44.41 Mb | 43.52 Mb | 49.18 Mb | 39.9 Mb |
Number of contigs | 302 | 391 | 517 | 286 |
Contig N50 (L50) | 1.8 Mb (31) | 1.3 Mb (40) | 1.7 Mb (38) | 3.2 Mb (20) |
Percentage of Nsb | 0.09% | 0.13% | 7.15% | 1.42% |
Heterozygosity ratec | 0.23% | 0.37% | 0.95% | 0.82% |
Estimated genome size (bp) | 236.36 Mb | 230.26 Mb | 225.33 Mb | 231.77 Mb |
Number of genes | 37,521 | 38,237 | 43,741 | 39,021 |
Number of predicted proteins | 40,067 | 40,960 | 46,196 | 41,386 |
Mean coding sequence (CDS) length (bp) | 1255 | 1250 | 1163 | 1235 |
Mean exons per CDS | 4.8 | 5 | 4.5 | 4.8 |
BUSCO scoresd | 97.30% | 97.80% | 98.20% | 94.10% |
