Fig. 2: Analysis of the simulated datasets subsampled from the 68 k PBMC dataset. | Nature Communications

Fig. 2: Analysis of the simulated datasets subsampled from the 68 k PBMC dataset.

From: GapClust is a light-weight approach distinguishing rare cells from voluminous single cell expression profiles

Fig. 2: Analysis of the simulated datasets subsampled from the 68 k PBMC dataset.

a The tSNE plot of the full dataset with reference labels (left), along with the three cell types selected for analysis (right). b Evaluation of the performance of different methods for rare cell type detection, quantified by F1 score. c Comparison of the ranking results for rare cells between GapClust and FiRE by continuous scores.

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