Fig. 5: Analysis of the intestine dataset. | Nature Communications

Fig. 5: Analysis of the intestine dataset.

From: GapClust is a light-weight approach distinguishing rare cells from voluminous single cell expression profiles

Fig. 5: Analysis of the intestine dataset.

a The two-dimensional embeddings learnt by EDGE on the intestine dataset with rare cell types labeled in different colours. b Expression of differentiated lineage marker genes across all rare cell types. Note that marker genes (Dclk1, Trpm5) of tuft cells reported by Arshad et al.29 are enriched in cluster R2. c Heatmap of top differentially expressed genes for each minor cluster. The same colour-coding scheme is used in all panels.

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